miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11076 3' -48.9 NC_002794.1 + 3988 0.66 0.999189
Target:  5'- -cGCCUACggaCCCGGAccacGCc-UCUUCa -3'
miRNA:   3'- uaUGGAUGaa-GGGCCUu---CGaaAGAAG- -5'
11076 3' -48.9 NC_002794.1 + 123296 0.66 0.999189
Target:  5'- -gACCUGCUg-CUGGAGGagaUCUUCg -3'
miRNA:   3'- uaUGGAUGAagGGCCUUCgaaAGAAG- -5'
11076 3' -48.9 NC_002794.1 + 81971 0.66 0.999189
Target:  5'- -cGCCcGCUUCCCGGAcGCg------ -3'
miRNA:   3'- uaUGGaUGAAGGGCCUuCGaaagaag -5'
11076 3' -48.9 NC_002794.1 + 89939 0.67 0.996973
Target:  5'- -cGCCgGCUUCUCGGGAGCcgacgUCg -3'
miRNA:   3'- uaUGGaUGAAGGGCCUUCGaaagaAG- -5'
11076 3' -48.9 NC_002794.1 + 58579 0.68 0.995724
Target:  5'- -cGCCUACUUCCaccagcgCGGcGGGCUggcCUUCg -3'
miRNA:   3'- uaUGGAUGAAGG-------GCC-UUCGAaa-GAAG- -5'
11076 3' -48.9 NC_002794.1 + 716 0.68 0.995073
Target:  5'- -gGCCUcuccGCgacCCCGGggGCUcugUUUUCg -3'
miRNA:   3'- uaUGGA----UGaa-GGGCCuuCGAa--AGAAG- -5'
11076 3' -48.9 NC_002794.1 + 57649 0.69 0.992303
Target:  5'- --uCCUGCg-CCCGGAGGCcgcCUUCa -3'
miRNA:   3'- uauGGAUGaaGGGCCUUCGaaaGAAG- -5'
11076 3' -48.9 NC_002794.1 + 167746 0.69 0.989852
Target:  5'- cUGCCUcGCggUCCGGuGAGCUUUCUgaUCg -3'
miRNA:   3'- uAUGGA-UGaaGGGCC-UUCGAAAGA--AG- -5'
11076 3' -48.9 NC_002794.1 + 77478 0.71 0.973566
Target:  5'- -aACCUGCUguuUCCCGGGaagcuccaaGGCUcgcuguauUUCUUCc -3'
miRNA:   3'- uaUGGAUGA---AGGGCCU---------UCGA--------AAGAAG- -5'
11076 3' -48.9 NC_002794.1 + 87738 0.72 0.943604
Target:  5'- cUACCUACUacguaCCCGGAAGCaagguaugCUUCc -3'
miRNA:   3'- uAUGGAUGAa----GGGCCUUCGaaa-----GAAG- -5'
11076 3' -48.9 NC_002794.1 + 64597 0.74 0.903979
Target:  5'- -cACUU-CUUCCCGGAGGacgUCUUCg -3'
miRNA:   3'- uaUGGAuGAAGGGCCUUCgaaAGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.