Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11076 | 3' | -48.9 | NC_002794.1 | + | 716 | 0.68 | 0.995073 |
Target: 5'- -gGCCUcuccGCgacCCCGGggGCUcugUUUUCg -3' miRNA: 3'- uaUGGA----UGaa-GGGCCuuCGAa--AGAAG- -5' |
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11076 | 3' | -48.9 | NC_002794.1 | + | 3988 | 0.66 | 0.999189 |
Target: 5'- -cGCCUACggaCCCGGAccacGCc-UCUUCa -3' miRNA: 3'- uaUGGAUGaa-GGGCCUu---CGaaAGAAG- -5' |
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11076 | 3' | -48.9 | NC_002794.1 | + | 57649 | 0.69 | 0.992303 |
Target: 5'- --uCCUGCg-CCCGGAGGCcgcCUUCa -3' miRNA: 3'- uauGGAUGaaGGGCCUUCGaaaGAAG- -5' |
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11076 | 3' | -48.9 | NC_002794.1 | + | 58579 | 0.68 | 0.995724 |
Target: 5'- -cGCCUACUUCCaccagcgCGGcGGGCUggcCUUCg -3' miRNA: 3'- uaUGGAUGAAGG-------GCC-UUCGAaa-GAAG- -5' |
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11076 | 3' | -48.9 | NC_002794.1 | + | 64597 | 0.74 | 0.903979 |
Target: 5'- -cACUU-CUUCCCGGAGGacgUCUUCg -3' miRNA: 3'- uaUGGAuGAAGGGCCUUCgaaAGAAG- -5' |
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11076 | 3' | -48.9 | NC_002794.1 | + | 77478 | 0.71 | 0.973566 |
Target: 5'- -aACCUGCUguuUCCCGGGaagcuccaaGGCUcgcuguauUUCUUCc -3' miRNA: 3'- uaUGGAUGA---AGGGCCU---------UCGA--------AAGAAG- -5' |
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11076 | 3' | -48.9 | NC_002794.1 | + | 81971 | 0.66 | 0.999189 |
Target: 5'- -cGCCcGCUUCCCGGAcGCg------ -3' miRNA: 3'- uaUGGaUGAAGGGCCUuCGaaagaag -5' |
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11076 | 3' | -48.9 | NC_002794.1 | + | 87738 | 0.72 | 0.943604 |
Target: 5'- cUACCUACUacguaCCCGGAAGCaagguaugCUUCc -3' miRNA: 3'- uAUGGAUGAa----GGGCCUUCGaaa-----GAAG- -5' |
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11076 | 3' | -48.9 | NC_002794.1 | + | 89939 | 0.67 | 0.996973 |
Target: 5'- -cGCCgGCUUCUCGGGAGCcgacgUCg -3' miRNA: 3'- uaUGGaUGAAGGGCCUUCGaaagaAG- -5' |
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11076 | 3' | -48.9 | NC_002794.1 | + | 123296 | 0.66 | 0.999189 |
Target: 5'- -gACCUGCUg-CUGGAGGagaUCUUCg -3' miRNA: 3'- uaUGGAUGAagGGCCUUCgaaAGAAG- -5' |
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11076 | 3' | -48.9 | NC_002794.1 | + | 167746 | 0.69 | 0.989852 |
Target: 5'- cUGCCUcGCggUCCGGuGAGCUUUCUgaUCg -3' miRNA: 3'- uAUGGA-UGaaGGGCC-UUCGAAAGA--AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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