miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11077 3' -54.1 NC_002794.1 + 87372 0.66 0.967367
Target:  5'- cGGcGuucUGGGCGGCGC--GGCCa---- -3'
miRNA:   3'- -CCuCu--ACCCGCCGCGauUCGGauauu -5'
11077 3' -54.1 NC_002794.1 + 106992 0.66 0.960637
Target:  5'- cGGcGGUG-GCGGCGCU-GGCCg---- -3'
miRNA:   3'- -CCuCUACcCGCCGCGAuUCGGauauu -5'
11077 3' -54.1 NC_002794.1 + 62498 0.66 0.960637
Target:  5'- uGGAcGgcGGGCGGCGCc--GCCg---- -3'
miRNA:   3'- -CCU-CuaCCCGCCGCGauuCGGauauu -5'
11077 3' -54.1 NC_002794.1 + 105894 0.66 0.959915
Target:  5'- gGGAGAggagucgccgcgGcGGCGGCGCUAccGCCg---- -3'
miRNA:   3'- -CCUCUa-----------C-CCGCCGCGAUu-CGGauauu -5'
11077 3' -54.1 NC_002794.1 + 92555 0.66 0.953005
Target:  5'- cGAGGUGGcCGGCGCcacgcAGGCCUu--- -3'
miRNA:   3'- cCUCUACCcGCCGCGa----UUCGGAuauu -5'
11077 3' -54.1 NC_002794.1 + 139175 0.67 0.948839
Target:  5'- aGGAGAggaGGGCGuaGCUGucgaaGGCC-AUGAc -3'
miRNA:   3'- -CCUCUa--CCCGCcgCGAU-----UCGGaUAUU- -5'
11077 3' -54.1 NC_002794.1 + 113138 0.67 0.944435
Target:  5'- cGAGAggaaGGGCgGGCGCgucAGCgUGUAGc -3'
miRNA:   3'- cCUCUa---CCCG-CCGCGau-UCGgAUAUU- -5'
11077 3' -54.1 NC_002794.1 + 118379 0.67 0.93979
Target:  5'- aGAGAUacugccgcucGGCGGCGCUcAGCCcGUAGc -3'
miRNA:   3'- cCUCUAc---------CCGCCGCGAuUCGGaUAUU- -5'
11077 3' -54.1 NC_002794.1 + 145326 0.68 0.924393
Target:  5'- --cGgcGGGCGGCGCUcGGGCCc---- -3'
miRNA:   3'- ccuCuaCCCGCCGCGA-UUCGGauauu -5'
11077 3' -54.1 NC_002794.1 + 126259 0.68 0.899144
Target:  5'- cGAGGUcggcggcuggcuGGCGGCGCUGGGCUUGc-- -3'
miRNA:   3'- cCUCUAc-----------CCGCCGCGAUUCGGAUauu -5'
11077 3' -54.1 NC_002794.1 + 84294 0.69 0.879976
Target:  5'- cGGGGAgcGGCGGCGCUuccuggcgaccGGGCCg---- -3'
miRNA:   3'- -CCUCUacCCGCCGCGA-----------UUCGGauauu -5'
11077 3' -54.1 NC_002794.1 + 119504 0.69 0.879976
Target:  5'- cGGGGucgucGGCGGCGCgGAGCCg---- -3'
miRNA:   3'- -CCUCuac--CCGCCGCGaUUCGGauauu -5'
11077 3' -54.1 NC_002794.1 + 146872 0.7 0.824592
Target:  5'- -cGGGUGGGgGGCGCggucGGCCgAUGAu -3'
miRNA:   3'- ccUCUACCCgCCGCGau--UCGGaUAUU- -5'
11077 3' -54.1 NC_002794.1 + 183602 0.71 0.77952
Target:  5'- cGGAGggGGGCcGCGCgcGGCCg---- -3'
miRNA:   3'- -CCUCuaCCCGcCGCGauUCGGauauu -5'
11077 3' -54.1 NC_002794.1 + 45581 0.72 0.721077
Target:  5'- -aAGAUGGGCGGCaGCaGGGCCg---- -3'
miRNA:   3'- ccUCUACCCGCCG-CGaUUCGGauauu -5'
11077 3' -54.1 NC_002794.1 + 18270 0.74 0.597708
Target:  5'- cGAGAUGcGCGGCGCcGAGCCUu--- -3'
miRNA:   3'- cCUCUACcCGCCGCGaUUCGGAuauu -5'
11077 3' -54.1 NC_002794.1 + 122584 0.81 0.288026
Target:  5'- uGGGGAUgaugaaggacGGGCuGGCGCUGAGCCUGa-- -3'
miRNA:   3'- -CCUCUA----------CCCG-CCGCGAUUCGGAUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.