Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11079 | 3' | -55 | NC_002794.1 | + | 17840 | 0.66 | 0.941119 |
Target: 5'- cCUGCACCGAGC-CGCUccugaCGGa-- -3' miRNA: 3'- aGACGUGGUUCGuGCGAaag--GCCcac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 14605 | 0.66 | 0.945632 |
Target: 5'- --cGCGCCGGGCAcCGCga--CGGGg- -3' miRNA: 3'- agaCGUGGUUCGU-GCGaaagGCCCac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 125655 | 0.66 | 0.941119 |
Target: 5'- uUCUGC-CUcGGCGCGCUgaaCGGGc- -3' miRNA: 3'- -AGACGuGGuUCGUGCGAaagGCCCac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 36566 | 0.66 | 0.941119 |
Target: 5'- gCUGCagacacgcgccGCCGAGCAgGCggUCCGcGUGc -3' miRNA: 3'- aGACG-----------UGGUUCGUgCGaaAGGCcCAC- -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 151495 | 0.66 | 0.957783 |
Target: 5'- gCUGUACaaacgcGUGCGCUcggUUCGGGUGg -3' miRNA: 3'- aGACGUGguu---CGUGCGAa--AGGCCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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