Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11079 | 3' | -55 | NC_002794.1 | + | 57996 | 0.66 | 0.945632 |
Target: 5'- --cGCGCCAGGCcuucguCGCcg-CCGGGg- -3' miRNA: 3'- agaCGUGGUUCGu-----GCGaaaGGCCCac -5' |
|||||||
11079 | 3' | -55 | NC_002794.1 | + | 14605 | 0.66 | 0.945632 |
Target: 5'- --cGCGCCGGGCAcCGCga--CGGGg- -3' miRNA: 3'- agaCGUGGUUCGU-GCGaaagGCCCac -5' |
|||||||
11079 | 3' | -55 | NC_002794.1 | + | 122883 | 0.66 | 0.949494 |
Target: 5'- aCUGCGCCGAGCucaacgaGCGCa---CGGGc- -3' miRNA: 3'- aGACGUGGUUCG-------UGCGaaagGCCCac -5' |
|||||||
11079 | 3' | -55 | NC_002794.1 | + | 867 | 0.66 | 0.955516 |
Target: 5'- --cGCGCCcGcgaggcggucggcguGCGCGCgggCCGGGUGc -3' miRNA: 3'- agaCGUGGuU---------------CGUGCGaaaGGCCCAC- -5' |
|||||||
11079 | 3' | -55 | NC_002794.1 | + | 151495 | 0.66 | 0.957783 |
Target: 5'- gCUGUACaaacgcGUGCGCUcggUUCGGGUGg -3' miRNA: 3'- aGACGUGguu---CGUGCGAa--AGGCCCAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home