Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11079 | 3' | -55 | NC_002794.1 | + | 867 | 0.66 | 0.955516 |
Target: 5'- --cGCGCCcGcgaggcggucggcguGCGCGCgggCCGGGUGc -3' miRNA: 3'- agaCGUGGuU---------------CGUGCGaaaGGCCCAC- -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 12495 | 0.67 | 0.931386 |
Target: 5'- cCUGCAcguucCCGAGC-CGCUcgaccggcggCUGGGUGg -3' miRNA: 3'- aGACGU-----GGUUCGuGCGAaa--------GGCCCAC- -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 12607 | 0.69 | 0.83738 |
Target: 5'- gCUGCGCCAccAGCGCGU---CUGGGg- -3' miRNA: 3'- aGACGUGGU--UCGUGCGaaaGGCCCac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 14605 | 0.66 | 0.945632 |
Target: 5'- --cGCGCCGGGCAcCGCga--CGGGg- -3' miRNA: 3'- agaCGUGGUUCGU-GCGaaagGCCCac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 17840 | 0.66 | 0.941119 |
Target: 5'- cCUGCACCGAGC-CGCUccugaCGGa-- -3' miRNA: 3'- aGACGUGGUUCGuGCGAaag--GCCcac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 36566 | 0.66 | 0.941119 |
Target: 5'- gCUGCagacacgcgccGCCGAGCAgGCggUCCGcGUGc -3' miRNA: 3'- aGACG-----------UGGUUCGUgCGaaAGGCcCAC- -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 42905 | 0.73 | 0.626964 |
Target: 5'- aCUGCACCugacguaGCGCUgggUCCGGGUc -3' miRNA: 3'- aGACGUGGuucg---UGCGAa--AGGCCCAc -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 57996 | 0.66 | 0.945632 |
Target: 5'- --cGCGCCAGGCcuucguCGCcg-CCGGGg- -3' miRNA: 3'- agaCGUGGUUCGu-----GCGaaaGGCCCac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 61146 | 0.69 | 0.868624 |
Target: 5'- gCUGCcgcccgaccCCGAGCGCGCggUCCGGa-- -3' miRNA: 3'- aGACGu--------GGUUCGUGCGaaAGGCCcac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 66826 | 0.67 | 0.936371 |
Target: 5'- --gGCGCCcGGCGCGac-UCCGGGc- -3' miRNA: 3'- agaCGUGGuUCGUGCgaaAGGCCCac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 76543 | 0.67 | 0.936371 |
Target: 5'- --gGCGCCGacgcGGuCGCGCg--CCGGGUa -3' miRNA: 3'- agaCGUGGU----UC-GUGCGaaaGGCCCAc -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 80513 | 0.68 | 0.875921 |
Target: 5'- uUCUGCGCCGcGGCGCGCgacgCCuGGc- -3' miRNA: 3'- -AGACGUGGU-UCGUGCGaaa-GGcCCac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 90362 | 0.72 | 0.718046 |
Target: 5'- -gUGCACCGuGCGCGUgcagggCCGGGUc -3' miRNA: 3'- agACGUGGUuCGUGCGaaa---GGCCCAc -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 108016 | 0.78 | 0.402457 |
Target: 5'- gCUGCACC-GGCACGUgcucggccuggaaUUCCGGGUGc -3' miRNA: 3'- aGACGUGGuUCGUGCGa------------AAGGCCCAC- -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 113737 | 0.71 | 0.766495 |
Target: 5'- aCUGCACCGaccggaccaGGCGCGCga---GGGUGu -3' miRNA: 3'- aGACGUGGU---------UCGUGCGaaaggCCCAC- -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 122883 | 0.66 | 0.949494 |
Target: 5'- aCUGCGCCGAGCucaacgaGCGCa---CGGGc- -3' miRNA: 3'- aGACGUGGUUCG-------UGCGaaagGCCCac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 125655 | 0.66 | 0.941119 |
Target: 5'- uUCUGC-CUcGGCGCGCUgaaCGGGc- -3' miRNA: 3'- -AGACGuGGuUCGUGCGAaagGCCCac -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 135981 | 0.73 | 0.637178 |
Target: 5'- --gGCGCCGGGCuccucuuCGCUgUCCGGGUc -3' miRNA: 3'- agaCGUGGUUCGu------GCGAaAGGCCCAc -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 151495 | 0.66 | 0.957783 |
Target: 5'- gCUGUACaaacgcGUGCGCUcggUUCGGGUGg -3' miRNA: 3'- aGACGUGguu---CGUGCGAa--AGGCCCAC- -5' |
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11079 | 3' | -55 | NC_002794.1 | + | 151655 | 0.68 | 0.909066 |
Target: 5'- --gGCACUuGGCuCGCcg-CCGGGUGa -3' miRNA: 3'- agaCGUGGuUCGuGCGaaaGGCCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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