miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11079 5' -54.2 NC_002794.1 + 120356 0.66 0.974622
Target:  5'- aUCACGCuGAGCUGguucucguuGGCCCugaaGGcGGCu -3'
miRNA:   3'- gAGUGUG-UUCGAU---------CCGGGug--CCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 37720 0.66 0.974622
Target:  5'- cCUCGCgacccGCGAGCggcGGCgCCGcCGGcGGCg -3'
miRNA:   3'- -GAGUG-----UGUUCGau-CCG-GGU-GCCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 14284 0.66 0.974622
Target:  5'- --gGCugGAGCgucagcgucgAGGCgCGgGGUAGCu -3'
miRNA:   3'- gagUGugUUCGa---------UCCGgGUgCCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 96752 0.66 0.971928
Target:  5'- gUCuCGCAAGC--GGCCgGCGGUcgAGUc -3'
miRNA:   3'- gAGuGUGUUCGauCCGGgUGCCA--UCG- -5'
11079 5' -54.2 NC_002794.1 + 190590 0.66 0.971928
Target:  5'- uCUCGCGCcgcAGCUccuccAGGUCCGCGacAGCc -3'
miRNA:   3'- -GAGUGUGu--UCGA-----UCCGGGUGCcaUCG- -5'
11079 5' -54.2 NC_002794.1 + 113674 0.66 0.971648
Target:  5'- -gCGCgGCGAGC-AGGCCCGCcaccgucGGcAGCg -3'
miRNA:   3'- gaGUG-UGUUCGaUCCGGGUG-------CCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 141600 0.66 0.970795
Target:  5'- gUCGC-CGGGCggcucggcgaccGGCUCGCGGUcuAGCg -3'
miRNA:   3'- gAGUGuGUUCGau----------CCGGGUGCCA--UCG- -5'
11079 5' -54.2 NC_002794.1 + 139621 0.66 0.969034
Target:  5'- aUCAgCGCGacgguGGCgaaGCCCACGGUgcAGCu -3'
miRNA:   3'- gAGU-GUGU-----UCGaucCGGGUGCCA--UCG- -5'
11079 5' -54.2 NC_002794.1 + 56247 0.66 0.969034
Target:  5'- cCUCGCAguAGCaGGGCacggCCACcGGgccgAGCa -3'
miRNA:   3'- -GAGUGUguUCGaUCCG----GGUG-CCa---UCG- -5'
11079 5' -54.2 NC_002794.1 + 32833 0.66 0.969034
Target:  5'- cCUCGC---GGCc-GGCUCAuCGGUAGCg -3'
miRNA:   3'- -GAGUGuguUCGauCCGGGU-GCCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 143050 0.66 0.969034
Target:  5'- -cCGC-CAGGUugaggccgUAGcGCCCGCGGcGGCa -3'
miRNA:   3'- gaGUGuGUUCG--------AUC-CGGGUGCCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 60575 0.66 0.968734
Target:  5'- -cUACAUGAGCUccacgccGGGCCUGCuGGaGGCg -3'
miRNA:   3'- gaGUGUGUUCGA-------UCCGGGUG-CCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 72495 0.66 0.965934
Target:  5'- aUCACGC-AGUcGGGCaCGCGGcAGCc -3'
miRNA:   3'- gAGUGUGuUCGaUCCGgGUGCCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 156978 0.66 0.965612
Target:  5'- gUCACGCGugccucuauguaaGGUccuagcGGGCCCGCGGccAGCc -3'
miRNA:   3'- gAGUGUGU-------------UCGa-----UCCGGGUGCCa-UCG- -5'
11079 5' -54.2 NC_002794.1 + 77649 0.66 0.962621
Target:  5'- aUCGCcCAccuGUgcGGCCCGCGGgucuGCg -3'
miRNA:   3'- gAGUGuGUu--CGauCCGGGUGCCau--CG- -5'
11079 5' -54.2 NC_002794.1 + 13804 0.66 0.962621
Target:  5'- uUCGCgACGGGCccGGCCgGCGGcgacGGCc -3'
miRNA:   3'- gAGUG-UGUUCGauCCGGgUGCCa---UCG- -5'
11079 5' -54.2 NC_002794.1 + 156001 0.66 0.95909
Target:  5'- uCUCGgACGAGCgacggGGGUCuCAUGGgucGCa -3'
miRNA:   3'- -GAGUgUGUUCGa----UCCGG-GUGCCau-CG- -5'
11079 5' -54.2 NC_002794.1 + 94275 0.66 0.95909
Target:  5'- uUUGCGC-GGCgcGGCCCgaGCGGggGGCg -3'
miRNA:   3'- gAGUGUGuUCGauCCGGG--UGCCa-UCG- -5'
11079 5' -54.2 NC_002794.1 + 117360 0.67 0.955337
Target:  5'- uCUCGUugGAGCggcGGGCCgccugCACGGUcGCg -3'
miRNA:   3'- -GAGUGugUUCGa--UCCGG-----GUGCCAuCG- -5'
11079 5' -54.2 NC_002794.1 + 55209 0.67 0.955337
Target:  5'- --gGCGC-GGCggAGGCCgGCGGUcgAGCc -3'
miRNA:   3'- gagUGUGuUCGa-UCCGGgUGCCA--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.