Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11079 | 5' | -54.2 | NC_002794.1 | + | 120356 | 0.66 | 0.974622 |
Target: 5'- aUCACGCuGAGCUGguucucguuGGCCCugaaGGcGGCu -3' miRNA: 3'- gAGUGUG-UUCGAU---------CCGGGug--CCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 94275 | 0.66 | 0.95909 |
Target: 5'- uUUGCGC-GGCgcGGCCCgaGCGGggGGCg -3' miRNA: 3'- gAGUGUGuUCGauCCGGG--UGCCa-UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 156001 | 0.66 | 0.95909 |
Target: 5'- uCUCGgACGAGCgacggGGGUCuCAUGGgucGCa -3' miRNA: 3'- -GAGUgUGUUCGa----UCCGG-GUGCCau-CG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 77649 | 0.66 | 0.962621 |
Target: 5'- aUCGCcCAccuGUgcGGCCCGCGGgucuGCg -3' miRNA: 3'- gAGUGuGUu--CGauCCGGGUGCCau--CG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 13804 | 0.66 | 0.962621 |
Target: 5'- uUCGCgACGGGCccGGCCgGCGGcgacGGCc -3' miRNA: 3'- gAGUG-UGUUCGauCCGGgUGCCa---UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 72495 | 0.66 | 0.965934 |
Target: 5'- aUCACGC-AGUcGGGCaCGCGGcAGCc -3' miRNA: 3'- gAGUGUGuUCGaUCCGgGUGCCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 156978 | 0.66 | 0.965612 |
Target: 5'- gUCACGCGugccucuauguaaGGUccuagcGGGCCCGCGGccAGCc -3' miRNA: 3'- gAGUGUGU-------------UCGa-----UCCGGGUGCCa-UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 60575 | 0.66 | 0.968734 |
Target: 5'- -cUACAUGAGCUccacgccGGGCCUGCuGGaGGCg -3' miRNA: 3'- gaGUGUGUUCGA-------UCCGGGUG-CCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 139621 | 0.66 | 0.969034 |
Target: 5'- aUCAgCGCGacgguGGCgaaGCCCACGGUgcAGCu -3' miRNA: 3'- gAGU-GUGU-----UCGaucCGGGUGCCA--UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 56247 | 0.66 | 0.969034 |
Target: 5'- cCUCGCAguAGCaGGGCacggCCACcGGgccgAGCa -3' miRNA: 3'- -GAGUGUguUCGaUCCG----GGUG-CCa---UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 32833 | 0.66 | 0.969034 |
Target: 5'- cCUCGC---GGCc-GGCUCAuCGGUAGCg -3' miRNA: 3'- -GAGUGuguUCGauCCGGGU-GCCAUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 37720 | 0.66 | 0.974622 |
Target: 5'- cCUCGCgacccGCGAGCggcGGCgCCGcCGGcGGCg -3' miRNA: 3'- -GAGUG-----UGUUCGau-CCG-GGU-GCCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 14284 | 0.66 | 0.974622 |
Target: 5'- --gGCugGAGCgucagcgucgAGGCgCGgGGUAGCu -3' miRNA: 3'- gagUGugUUCGa---------UCCGgGUgCCAUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 96752 | 0.66 | 0.971928 |
Target: 5'- gUCuCGCAAGC--GGCCgGCGGUcgAGUc -3' miRNA: 3'- gAGuGUGUUCGauCCGGgUGCCA--UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 113674 | 0.66 | 0.971648 |
Target: 5'- -gCGCgGCGAGC-AGGCCCGCcaccgucGGcAGCg -3' miRNA: 3'- gaGUG-UGUUCGaUCCGGGUG-------CCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 190590 | 0.66 | 0.971928 |
Target: 5'- uCUCGCGCcgcAGCUccuccAGGUCCGCGacAGCc -3' miRNA: 3'- -GAGUGUGu--UCGA-----UCCGGGUGCcaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 141600 | 0.66 | 0.970795 |
Target: 5'- gUCGC-CGGGCggcucggcgaccGGCUCGCGGUcuAGCg -3' miRNA: 3'- gAGUGuGUUCGau----------CCGGGUGCCA--UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 143050 | 0.66 | 0.969034 |
Target: 5'- -cCGC-CAGGUugaggccgUAGcGCCCGCGGcGGCa -3' miRNA: 3'- gaGUGuGUUCG--------AUC-CGGGUGCCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 98920 | 0.67 | 0.947146 |
Target: 5'- uUCAUgaGCGGGCUGGGCgCGgcCGGgaaggGGCu -3' miRNA: 3'- gAGUG--UGUUCGAUCCGgGU--GCCa----UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 113170 | 0.67 | 0.947146 |
Target: 5'- -gCGCGCGGGCggcGGCggUCGCGGaGGCg -3' miRNA: 3'- gaGUGUGUUCGau-CCG--GGUGCCaUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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