miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11079 5' -54.2 NC_002794.1 + 156065 0.83 0.235203
Target:  5'- gUCGaauagaGCGGGCguuGGCCCACGGUGGCg -3'
miRNA:   3'- gAGUg-----UGUUCGau-CCGGGUGCCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 106973 0.74 0.649846
Target:  5'- cCUCGCGCGgcGGCc-GGCaCgGCGGUGGCg -3'
miRNA:   3'- -GAGUGUGU--UCGauCCG-GgUGCCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 45454 0.73 0.68044
Target:  5'- gUCGCGCGucAGC-GGGCCCAgGGUcccgAGCu -3'
miRNA:   3'- gAGUGUGU--UCGaUCCGGGUgCCA----UCG- -5'
11079 5' -54.2 NC_002794.1 + 122622 0.72 0.769089
Target:  5'- gUCACGCGcGGCUacGGGCaCGCGGUGGa -3'
miRNA:   3'- gAGUGUGU-UCGA--UCCGgGUGCCAUCg -5'
11079 5' -54.2 NC_002794.1 + 745 0.71 0.786764
Target:  5'- uUCGCG-GGGCUcugccguuuugccGGGCCCGCGGU-GCa -3'
miRNA:   3'- gAGUGUgUUCGA-------------UCCGGGUGCCAuCG- -5'
11079 5' -54.2 NC_002794.1 + 158147 0.71 0.787681
Target:  5'- gCUCGCGgcgacgaGGGgaAGGUCCACGGUgAGCg -3'
miRNA:   3'- -GAGUGUg------UUCgaUCCGGGUGCCA-UCG- -5'
11079 5' -54.2 NC_002794.1 + 186873 0.71 0.787681
Target:  5'- --aGCAgCGGGCUcGGCUCGCGGUccGGCg -3'
miRNA:   3'- gagUGU-GUUCGAuCCGGGUGCCA--UCG- -5'
11079 5' -54.2 NC_002794.1 + 187501 0.71 0.805713
Target:  5'- -cCGCGCAGGCggccagGGcGCCCGCGGaGGa -3'
miRNA:   3'- gaGUGUGUUCGa-----UC-CGGGUGCCaUCg -5'
11079 5' -54.2 NC_002794.1 + 76295 0.7 0.831558
Target:  5'- uUCGCccCGAGCgucUGGGCCCGCGccGGCa -3'
miRNA:   3'- gAGUGu-GUUCG---AUCCGGGUGCcaUCG- -5'
11079 5' -54.2 NC_002794.1 + 193048 0.7 0.831558
Target:  5'- aCUCGCACAgcgcccgcaccGGCUgcGGGCCguCGCGGgacAGCc -3'
miRNA:   3'- -GAGUGUGU-----------UCGA--UCCGG--GUGCCa--UCG- -5'
11079 5' -54.2 NC_002794.1 + 92316 0.7 0.83982
Target:  5'- --gGCGCGGGCggcggGGGCCCggGCGGgcGGCu -3'
miRNA:   3'- gagUGUGUUCGa----UCCGGG--UGCCa-UCG- -5'
11079 5' -54.2 NC_002794.1 + 94396 0.7 0.863445
Target:  5'- gUCGCGCGuGCgGGGaCCGCGGUguggGGCg -3'
miRNA:   3'- gAGUGUGUuCGaUCCgGGUGCCA----UCG- -5'
11079 5' -54.2 NC_002794.1 + 112523 0.7 0.863445
Target:  5'- gCUgGCGCAGG--AGGUCCaagaaguaGCGGUAGCg -3'
miRNA:   3'- -GAgUGUGUUCgaUCCGGG--------UGCCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 144900 0.69 0.87091
Target:  5'- gCUCGCGCc-GCUGGGCCCcgcCGccGGCa -3'
miRNA:   3'- -GAGUGUGuuCGAUCCGGGu--GCcaUCG- -5'
11079 5' -54.2 NC_002794.1 + 119153 0.69 0.903044
Target:  5'- gUCGCGC-AGC-AGGUCCGCgaaggccucggggaGGUGGCc -3'
miRNA:   3'- gAGUGUGuUCGaUCCGGGUG--------------CCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 117190 0.68 0.911035
Target:  5'- uUCGCGCAgaucGGCgucGGGCCCG-GGcGGCu -3'
miRNA:   3'- gAGUGUGU----UCGa--UCCGGGUgCCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 116429 0.68 0.91691
Target:  5'- --gGCGCGGGUcAGgacGCCgACGGUGGCg -3'
miRNA:   3'- gagUGUGUUCGaUC---CGGgUGCCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 17963 0.68 0.922547
Target:  5'- aCUCGCcCGGGCcgugagccUGGcGCCCACGGccgccGGCg -3'
miRNA:   3'- -GAGUGuGUUCG--------AUC-CGGGUGCCa----UCG- -5'
11079 5' -54.2 NC_002794.1 + 32151 0.68 0.933102
Target:  5'- uCUCGCACAgcuccgAGCgguGGCCCGCc-UGGCc -3'
miRNA:   3'- -GAGUGUGU------UCGau-CCGGGUGccAUCG- -5'
11079 5' -54.2 NC_002794.1 + 151589 0.68 0.933102
Target:  5'- -gCGCGCGccgccGCcgcGGGCCCGCGGUuccucGGCu -3'
miRNA:   3'- gaGUGUGUu----CGa--UCCGGGUGCCA-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.