Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11079 | 5' | -54.2 | NC_002794.1 | + | 745 | 0.71 | 0.786764 |
Target: 5'- uUCGCG-GGGCUcugccguuuugccGGGCCCGCGGU-GCa -3' miRNA: 3'- gAGUGUgUUCGA-------------UCCGGGUGCCAuCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 13804 | 0.66 | 0.962621 |
Target: 5'- uUCGCgACGGGCccGGCCgGCGGcgacGGCc -3' miRNA: 3'- gAGUG-UGUUCGauCCGGgUGCCa---UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 14284 | 0.66 | 0.974622 |
Target: 5'- --gGCugGAGCgucagcgucgAGGCgCGgGGUAGCu -3' miRNA: 3'- gagUGugUUCGa---------UCCGgGUgCCAUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 17963 | 0.68 | 0.922547 |
Target: 5'- aCUCGCcCGGGCcgugagccUGGcGCCCACGGccgccGGCg -3' miRNA: 3'- -GAGUGuGUUCG--------AUC-CGGGUGCCa----UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 32151 | 0.68 | 0.933102 |
Target: 5'- uCUCGCACAgcuccgAGCgguGGCCCGCc-UGGCc -3' miRNA: 3'- -GAGUGUGU------UCGau-CCGGGUGccAUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 32833 | 0.66 | 0.969034 |
Target: 5'- cCUCGC---GGCc-GGCUCAuCGGUAGCg -3' miRNA: 3'- -GAGUGuguUCGauCCGGGU-GCCAUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 34832 | 0.67 | 0.947146 |
Target: 5'- cCUCGCcggcgccggaGCGGGCgucggagcGGGCgCCGCGGgcGCc -3' miRNA: 3'- -GAGUG----------UGUUCGa-------UCCG-GGUGCCauCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 37720 | 0.66 | 0.974622 |
Target: 5'- cCUCGCgacccGCGAGCggcGGCgCCGcCGGcGGCg -3' miRNA: 3'- -GAGUG-----UGUUCGau-CCG-GGU-GCCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 45454 | 0.73 | 0.68044 |
Target: 5'- gUCGCGCGucAGC-GGGCCCAgGGUcccgAGCu -3' miRNA: 3'- gAGUGUGU--UCGaUCCGGGUgCCA----UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 55209 | 0.67 | 0.955337 |
Target: 5'- --gGCGC-GGCggAGGCCgGCGGUcgAGCc -3' miRNA: 3'- gagUGUGuUCGa-UCCGGgUGCCA--UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 56247 | 0.66 | 0.969034 |
Target: 5'- cCUCGCAguAGCaGGGCacggCCACcGGgccgAGCa -3' miRNA: 3'- -GAGUGUguUCGaUCCG----GGUG-CCa---UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 60575 | 0.66 | 0.968734 |
Target: 5'- -cUACAUGAGCUccacgccGGGCCUGCuGGaGGCg -3' miRNA: 3'- gaGUGUGUUCGA-------UCCGGGUG-CCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 72495 | 0.66 | 0.965934 |
Target: 5'- aUCACGC-AGUcGGGCaCGCGGcAGCc -3' miRNA: 3'- gAGUGUGuUCGaUCCGgGUGCCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 76295 | 0.7 | 0.831558 |
Target: 5'- uUCGCccCGAGCgucUGGGCCCGCGccGGCa -3' miRNA: 3'- gAGUGu-GUUCG---AUCCGGGUGCcaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 77649 | 0.66 | 0.962621 |
Target: 5'- aUCGCcCAccuGUgcGGCCCGCGGgucuGCg -3' miRNA: 3'- gAGUGuGUu--CGauCCGGGUGCCau--CG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 92316 | 0.7 | 0.83982 |
Target: 5'- --gGCGCGGGCggcggGGGCCCggGCGGgcGGCu -3' miRNA: 3'- gagUGUGUUCGa----UCCGGG--UGCCa-UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 94275 | 0.66 | 0.95909 |
Target: 5'- uUUGCGC-GGCgcGGCCCgaGCGGggGGCg -3' miRNA: 3'- gAGUGUGuUCGauCCGGG--UGCCa-UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 94396 | 0.7 | 0.863445 |
Target: 5'- gUCGCGCGuGCgGGGaCCGCGGUguggGGCg -3' miRNA: 3'- gAGUGUGUuCGaUCCgGGUGCCA----UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 96752 | 0.66 | 0.971928 |
Target: 5'- gUCuCGCAAGC--GGCCgGCGGUcgAGUc -3' miRNA: 3'- gAGuGUGUUCGauCCGGgUGCCA--UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 98920 | 0.67 | 0.947146 |
Target: 5'- uUCAUgaGCGGGCUGGGCgCGgcCGGgaaggGGCu -3' miRNA: 3'- gAGUG--UGUUCGAUCCGgGU--GCCa----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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