miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11079 5' -54.2 NC_002794.1 + 106973 0.74 0.649846
Target:  5'- cCUCGCGCGgcGGCc-GGCaCgGCGGUGGCg -3'
miRNA:   3'- -GAGUGUGU--UCGauCCG-GgUGCCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 111561 0.67 0.947146
Target:  5'- aCUCcgGCGCcAGCgcGGUcaCUACGGUGGCc -3'
miRNA:   3'- -GAG--UGUGuUCGauCCG--GGUGCCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 112523 0.7 0.863445
Target:  5'- gCUgGCGCAGG--AGGUCCaagaaguaGCGGUAGCg -3'
miRNA:   3'- -GAgUGUGUUCgaUCCGGG--------UGCCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 113170 0.67 0.947146
Target:  5'- -gCGCGCGGGCggcGGCggUCGCGGaGGCg -3'
miRNA:   3'- gaGUGUGUUCGau-CCG--GGUGCCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 113674 0.66 0.971648
Target:  5'- -gCGCgGCGAGC-AGGCCCGCcaccgucGGcAGCg -3'
miRNA:   3'- gaGUG-UGUUCGaUCCGGGUG-------CCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 116429 0.68 0.91691
Target:  5'- --gGCGCGGGUcAGgacGCCgACGGUGGCg -3'
miRNA:   3'- gagUGUGUUCGaUC---CGGgUGCCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 117190 0.68 0.911035
Target:  5'- uUCGCGCAgaucGGCgucGGGCCCG-GGcGGCu -3'
miRNA:   3'- gAGUGUGU----UCGa--UCCGGGUgCCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 117360 0.67 0.955337
Target:  5'- uCUCGUugGAGCggcGGGCCgccugCACGGUcGCg -3'
miRNA:   3'- -GAGUGugUUCGa--UCCGG-----GUGCCAuCG- -5'
11079 5' -54.2 NC_002794.1 + 119153 0.69 0.903044
Target:  5'- gUCGCGC-AGC-AGGUCCGCgaaggccucggggaGGUGGCc -3'
miRNA:   3'- gAGUGUGuUCGaUCCGGGUG--------------CCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 120356 0.66 0.974622
Target:  5'- aUCACGCuGAGCUGguucucguuGGCCCugaaGGcGGCu -3'
miRNA:   3'- gAGUGUG-UUCGAU---------CCGGGug--CCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 122622 0.72 0.769089
Target:  5'- gUCACGCGcGGCUacGGGCaCGCGGUGGa -3'
miRNA:   3'- gAGUGUGU-UCGA--UCCGgGUGCCAUCg -5'
11079 5' -54.2 NC_002794.1 + 139621 0.66 0.969034
Target:  5'- aUCAgCGCGacgguGGCgaaGCCCACGGUgcAGCu -3'
miRNA:   3'- gAGU-GUGU-----UCGaucCGGGUGCCA--UCG- -5'
11079 5' -54.2 NC_002794.1 + 141600 0.66 0.970795
Target:  5'- gUCGC-CGGGCggcucggcgaccGGCUCGCGGUcuAGCg -3'
miRNA:   3'- gAGUGuGUUCGau----------CCGGGUGCCA--UCG- -5'
11079 5' -54.2 NC_002794.1 + 143050 0.66 0.969034
Target:  5'- -cCGC-CAGGUugaggccgUAGcGCCCGCGGcGGCa -3'
miRNA:   3'- gaGUGuGUUCG--------AUC-CGGGUGCCaUCG- -5'
11079 5' -54.2 NC_002794.1 + 144900 0.69 0.87091
Target:  5'- gCUCGCGCc-GCUGGGCCCcgcCGccGGCa -3'
miRNA:   3'- -GAGUGUGuuCGAUCCGGGu--GCcaUCG- -5'
11079 5' -54.2 NC_002794.1 + 151589 0.68 0.933102
Target:  5'- -gCGCGCGccgccGCcgcGGGCCCGCGGUuccucGGCu -3'
miRNA:   3'- gaGUGUGUu----CGa--UCCGGGUGCCA-----UCG- -5'
11079 5' -54.2 NC_002794.1 + 156001 0.66 0.95909
Target:  5'- uCUCGgACGAGCgacggGGGUCuCAUGGgucGCa -3'
miRNA:   3'- -GAGUgUGUUCGa----UCCGG-GUGCCau-CG- -5'
11079 5' -54.2 NC_002794.1 + 156065 0.83 0.235203
Target:  5'- gUCGaauagaGCGGGCguuGGCCCACGGUGGCg -3'
miRNA:   3'- gAGUg-----UGUUCGau-CCGGGUGCCAUCG- -5'
11079 5' -54.2 NC_002794.1 + 156978 0.66 0.965612
Target:  5'- gUCACGCGugccucuauguaaGGUccuagcGGGCCCGCGGccAGCc -3'
miRNA:   3'- gAGUGUGU-------------UCGa-----UCCGGGUGCCa-UCG- -5'
11079 5' -54.2 NC_002794.1 + 158147 0.71 0.787681
Target:  5'- gCUCGCGgcgacgaGGGgaAGGUCCACGGUgAGCg -3'
miRNA:   3'- -GAGUGUg------UUCgaUCCGGGUGCCA-UCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.