Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11079 | 5' | -54.2 | NC_002794.1 | + | 106973 | 0.74 | 0.649846 |
Target: 5'- cCUCGCGCGgcGGCc-GGCaCgGCGGUGGCg -3' miRNA: 3'- -GAGUGUGU--UCGauCCG-GgUGCCAUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 111561 | 0.67 | 0.947146 |
Target: 5'- aCUCcgGCGCcAGCgcGGUcaCUACGGUGGCc -3' miRNA: 3'- -GAG--UGUGuUCGauCCG--GGUGCCAUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 112523 | 0.7 | 0.863445 |
Target: 5'- gCUgGCGCAGG--AGGUCCaagaaguaGCGGUAGCg -3' miRNA: 3'- -GAgUGUGUUCgaUCCGGG--------UGCCAUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 113170 | 0.67 | 0.947146 |
Target: 5'- -gCGCGCGGGCggcGGCggUCGCGGaGGCg -3' miRNA: 3'- gaGUGUGUUCGau-CCG--GGUGCCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 113674 | 0.66 | 0.971648 |
Target: 5'- -gCGCgGCGAGC-AGGCCCGCcaccgucGGcAGCg -3' miRNA: 3'- gaGUG-UGUUCGaUCCGGGUG-------CCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 116429 | 0.68 | 0.91691 |
Target: 5'- --gGCGCGGGUcAGgacGCCgACGGUGGCg -3' miRNA: 3'- gagUGUGUUCGaUC---CGGgUGCCAUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 117190 | 0.68 | 0.911035 |
Target: 5'- uUCGCGCAgaucGGCgucGGGCCCG-GGcGGCu -3' miRNA: 3'- gAGUGUGU----UCGa--UCCGGGUgCCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 117360 | 0.67 | 0.955337 |
Target: 5'- uCUCGUugGAGCggcGGGCCgccugCACGGUcGCg -3' miRNA: 3'- -GAGUGugUUCGa--UCCGG-----GUGCCAuCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 119153 | 0.69 | 0.903044 |
Target: 5'- gUCGCGC-AGC-AGGUCCGCgaaggccucggggaGGUGGCc -3' miRNA: 3'- gAGUGUGuUCGaUCCGGGUG--------------CCAUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 120356 | 0.66 | 0.974622 |
Target: 5'- aUCACGCuGAGCUGguucucguuGGCCCugaaGGcGGCu -3' miRNA: 3'- gAGUGUG-UUCGAU---------CCGGGug--CCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 122622 | 0.72 | 0.769089 |
Target: 5'- gUCACGCGcGGCUacGGGCaCGCGGUGGa -3' miRNA: 3'- gAGUGUGU-UCGA--UCCGgGUGCCAUCg -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 139621 | 0.66 | 0.969034 |
Target: 5'- aUCAgCGCGacgguGGCgaaGCCCACGGUgcAGCu -3' miRNA: 3'- gAGU-GUGU-----UCGaucCGGGUGCCA--UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 141600 | 0.66 | 0.970795 |
Target: 5'- gUCGC-CGGGCggcucggcgaccGGCUCGCGGUcuAGCg -3' miRNA: 3'- gAGUGuGUUCGau----------CCGGGUGCCA--UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 143050 | 0.66 | 0.969034 |
Target: 5'- -cCGC-CAGGUugaggccgUAGcGCCCGCGGcGGCa -3' miRNA: 3'- gaGUGuGUUCG--------AUC-CGGGUGCCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 144900 | 0.69 | 0.87091 |
Target: 5'- gCUCGCGCc-GCUGGGCCCcgcCGccGGCa -3' miRNA: 3'- -GAGUGUGuuCGAUCCGGGu--GCcaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 151589 | 0.68 | 0.933102 |
Target: 5'- -gCGCGCGccgccGCcgcGGGCCCGCGGUuccucGGCu -3' miRNA: 3'- gaGUGUGUu----CGa--UCCGGGUGCCA-----UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 156001 | 0.66 | 0.95909 |
Target: 5'- uCUCGgACGAGCgacggGGGUCuCAUGGgucGCa -3' miRNA: 3'- -GAGUgUGUUCGa----UCCGG-GUGCCau-CG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 156065 | 0.83 | 0.235203 |
Target: 5'- gUCGaauagaGCGGGCguuGGCCCACGGUGGCg -3' miRNA: 3'- gAGUg-----UGUUCGau-CCGGGUGCCAUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 156978 | 0.66 | 0.965612 |
Target: 5'- gUCACGCGugccucuauguaaGGUccuagcGGGCCCGCGGccAGCc -3' miRNA: 3'- gAGUGUGU-------------UCGa-----UCCGGGUGCCa-UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 158147 | 0.71 | 0.787681 |
Target: 5'- gCUCGCGgcgacgaGGGgaAGGUCCACGGUgAGCg -3' miRNA: 3'- -GAGUGUg------UUCgaUCCGGGUGCCA-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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