Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11079 | 5' | -54.2 | NC_002794.1 | + | 13804 | 0.66 | 0.962621 |
Target: 5'- uUCGCgACGGGCccGGCCgGCGGcgacGGCc -3' miRNA: 3'- gAGUG-UGUUCGauCCGGgUGCCa---UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 72495 | 0.66 | 0.965934 |
Target: 5'- aUCACGC-AGUcGGGCaCGCGGcAGCc -3' miRNA: 3'- gAGUGUGuUCGaUCCGgGUGCCaUCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 156978 | 0.66 | 0.965612 |
Target: 5'- gUCACGCGugccucuauguaaGGUccuagcGGGCCCGCGGccAGCc -3' miRNA: 3'- gAGUGUGU-------------UCGa-----UCCGGGUGCCa-UCG- -5' |
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11079 | 5' | -54.2 | NC_002794.1 | + | 120356 | 0.66 | 0.974622 |
Target: 5'- aUCACGCuGAGCUGguucucguuGGCCCugaaGGcGGCu -3' miRNA: 3'- gAGUGUG-UUCGAU---------CCGGGug--CCaUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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