miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11080 3' -48.7 NC_002794.1 + 32865 0.66 0.999693
Target:  5'- cCGAGccggCGGGCGgcgGCGGCGGcGGCg- -3'
miRNA:   3'- -GCUUaa--GUUUGCa--CGCUGUCaCCGau -5'
11080 3' -48.7 NC_002794.1 + 155997 0.66 0.999515
Target:  5'- aCGAucUCGGACGaGCGACGGgGGUc- -3'
miRNA:   3'- -GCUuaAGUUUGCaCGCUGUCaCCGau -5'
11080 3' -48.7 NC_002794.1 + 50564 0.66 0.999515
Target:  5'- gGAAgccugUCGAcacgGCGUGCG-CGGcGGCUGg -3'
miRNA:   3'- gCUUa----AGUU----UGCACGCuGUCaCCGAU- -5'
11080 3' -48.7 NC_002794.1 + 31870 0.66 0.999515
Target:  5'- aGuugUCGAGgGUGCGACAGUacucgaccagcGGCg- -3'
miRNA:   3'- gCuuaAGUUUgCACGCUGUCA-----------CCGau -5'
11080 3' -48.7 NC_002794.1 + 126732 0.66 0.999397
Target:  5'- uGggUggGGACgGUGgGACGGUGGUg- -3'
miRNA:   3'- gCuuAagUUUG-CACgCUGUCACCGau -5'
11080 3' -48.7 NC_002794.1 + 96901 0.66 0.999397
Target:  5'- aGGcgUCGGGCGgagGUGGCGGaGGCg- -3'
miRNA:   3'- gCUuaAGUUUGCa--CGCUGUCaCCGau -5'
11080 3' -48.7 NC_002794.1 + 139616 0.66 0.999397
Target:  5'- cCGAGaUCAGc---GCGACGGUGGCg- -3'
miRNA:   3'- -GCUUaAGUUugcaCGCUGUCACCGau -5'
11080 3' -48.7 NC_002794.1 + 94181 0.66 0.999189
Target:  5'- aCGAAUgugcguuuccggcCAAGCGguugcgcuUGUGACGGUGGCg- -3'
miRNA:   3'- -GCUUAa------------GUUUGC--------ACGCUGUCACCGau -5'
11080 3' -48.7 NC_002794.1 + 52161 0.67 0.999084
Target:  5'- uCGAAc-CAGGCG-GCGGCGGUGcGCa- -3'
miRNA:   3'- -GCUUaaGUUUGCaCGCUGUCAC-CGau -5'
11080 3' -48.7 NC_002794.1 + 107611 0.67 0.999084
Target:  5'- aCGGGga-AGACG-GgGACGGUGGCg- -3'
miRNA:   3'- -GCUUaagUUUGCaCgCUGUCACCGau -5'
11080 3' -48.7 NC_002794.1 + 55264 0.67 0.99864
Target:  5'- cCGAAgagcCGGGgG-GCGGCGGUGGCg- -3'
miRNA:   3'- -GCUUaa--GUUUgCaCGCUGUCACCGau -5'
11080 3' -48.7 NC_002794.1 + 94788 0.67 0.99864
Target:  5'- gCGAGUUCGAGCG-GC-ACGGggaUGGCa- -3'
miRNA:   3'- -GCUUAAGUUUGCaCGcUGUC---ACCGau -5'
11080 3' -48.7 NC_002794.1 + 37880 0.67 0.998358
Target:  5'- ----cUCGGGCGgcgGgGGCGGUGGCg- -3'
miRNA:   3'- gcuuaAGUUUGCa--CgCUGUCACCGau -5'
11080 3' -48.7 NC_002794.1 + 120983 0.67 0.998358
Target:  5'- gCGAGUUCGuguAGCG-GCGGCGGgccaUGGCc- -3'
miRNA:   3'- -GCUUAAGU---UUGCaCGCUGUC----ACCGau -5'
11080 3' -48.7 NC_002794.1 + 116394 0.68 0.996684
Target:  5'- uCGAAgaCGAAgGUGUGGCGG-GGCg- -3'
miRNA:   3'- -GCUUaaGUUUgCACGCUGUCaCCGau -5'
11080 3' -48.7 NC_002794.1 + 134256 0.68 0.996684
Target:  5'- aCGuGUUCAucgacGCGUGCGGC-GUGGUg- -3'
miRNA:   3'- -GCuUAAGUu----UGCACGCUGuCACCGau -5'
11080 3' -48.7 NC_002794.1 + 179669 0.69 0.993802
Target:  5'- cCGGAcggCAcccGCGgcgGCGACGGUGGCg- -3'
miRNA:   3'- -GCUUaa-GUu--UGCa--CGCUGUCACCGau -5'
11080 3' -48.7 NC_002794.1 + 119438 0.7 0.987685
Target:  5'- ----gUCcGACGgcgGCGGCGGUGGCg- -3'
miRNA:   3'- gcuuaAGuUUGCa--CGCUGUCACCGau -5'
11080 3' -48.7 NC_002794.1 + 168907 0.72 0.966167
Target:  5'- gCGAAacucaacgUAAACGUGgGAgGGUGGCUAa -3'
miRNA:   3'- -GCUUaa------GUUUGCACgCUgUCACCGAU- -5'
11080 3' -48.7 NC_002794.1 + 21651 0.73 0.946548
Target:  5'- aCGAAg--AAGCG-GCGGCGGUGGCg- -3'
miRNA:   3'- -GCUUaagUUUGCaCGCUGUCACCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.