Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11080 | 3' | -48.7 | NC_002794.1 | + | 32865 | 0.66 | 0.999693 |
Target: 5'- cCGAGccggCGGGCGgcgGCGGCGGcGGCg- -3' miRNA: 3'- -GCUUaa--GUUUGCa--CGCUGUCaCCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 94181 | 0.66 | 0.999189 |
Target: 5'- aCGAAUgugcguuuccggcCAAGCGguugcgcuUGUGACGGUGGCg- -3' miRNA: 3'- -GCUUAa------------GUUUGC--------ACGCUGUCACCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 126732 | 0.66 | 0.999397 |
Target: 5'- uGggUggGGACgGUGgGACGGUGGUg- -3' miRNA: 3'- gCuuAagUUUG-CACgCUGUCACCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 96901 | 0.66 | 0.999397 |
Target: 5'- aGGcgUCGGGCGgagGUGGCGGaGGCg- -3' miRNA: 3'- gCUuaAGUUUGCa--CGCUGUCaCCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 31870 | 0.66 | 0.999515 |
Target: 5'- aGuugUCGAGgGUGCGACAGUacucgaccagcGGCg- -3' miRNA: 3'- gCuuaAGUUUgCACGCUGUCA-----------CCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 139616 | 0.66 | 0.999397 |
Target: 5'- cCGAGaUCAGc---GCGACGGUGGCg- -3' miRNA: 3'- -GCUUaAGUUugcaCGCUGUCACCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 50564 | 0.66 | 0.999515 |
Target: 5'- gGAAgccugUCGAcacgGCGUGCG-CGGcGGCUGg -3' miRNA: 3'- gCUUa----AGUU----UGCACGCuGUCaCCGAU- -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 155997 | 0.66 | 0.999515 |
Target: 5'- aCGAucUCGGACGaGCGACGGgGGUc- -3' miRNA: 3'- -GCUuaAGUUUGCaCGCUGUCaCCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 120983 | 0.67 | 0.998358 |
Target: 5'- gCGAGUUCGuguAGCG-GCGGCGGgccaUGGCc- -3' miRNA: 3'- -GCUUAAGU---UUGCaCGCUGUC----ACCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 37880 | 0.67 | 0.998358 |
Target: 5'- ----cUCGGGCGgcgGgGGCGGUGGCg- -3' miRNA: 3'- gcuuaAGUUUGCa--CgCUGUCACCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 55264 | 0.67 | 0.99864 |
Target: 5'- cCGAAgagcCGGGgG-GCGGCGGUGGCg- -3' miRNA: 3'- -GCUUaa--GUUUgCaCGCUGUCACCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 94788 | 0.67 | 0.99864 |
Target: 5'- gCGAGUUCGAGCG-GC-ACGGggaUGGCa- -3' miRNA: 3'- -GCUUAAGUUUGCaCGcUGUC---ACCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 107611 | 0.67 | 0.999084 |
Target: 5'- aCGGGga-AGACG-GgGACGGUGGCg- -3' miRNA: 3'- -GCUUaagUUUGCaCgCUGUCACCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 52161 | 0.67 | 0.999084 |
Target: 5'- uCGAAc-CAGGCG-GCGGCGGUGcGCa- -3' miRNA: 3'- -GCUUaaGUUUGCaCGCUGUCAC-CGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 116394 | 0.68 | 0.996684 |
Target: 5'- uCGAAgaCGAAgGUGUGGCGG-GGCg- -3' miRNA: 3'- -GCUUaaGUUUgCACGCUGUCaCCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 134256 | 0.68 | 0.996684 |
Target: 5'- aCGuGUUCAucgacGCGUGCGGC-GUGGUg- -3' miRNA: 3'- -GCuUAAGUu----UGCACGCUGuCACCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 179669 | 0.69 | 0.993802 |
Target: 5'- cCGGAcggCAcccGCGgcgGCGACGGUGGCg- -3' miRNA: 3'- -GCUUaa-GUu--UGCa--CGCUGUCACCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 119438 | 0.7 | 0.987685 |
Target: 5'- ----gUCcGACGgcgGCGGCGGUGGCg- -3' miRNA: 3'- gcuuaAGuUUGCa--CGCUGUCACCGau -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 168907 | 0.72 | 0.966167 |
Target: 5'- gCGAAacucaacgUAAACGUGgGAgGGUGGCUAa -3' miRNA: 3'- -GCUUaa------GUUUGCACgCUgUCACCGAU- -5' |
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11080 | 3' | -48.7 | NC_002794.1 | + | 21651 | 0.73 | 0.946548 |
Target: 5'- aCGAAg--AAGCG-GCGGCGGUGGCg- -3' miRNA: 3'- -GCUUaagUUUGCaCGCUGUCACCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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