miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11081 3' -59.9 NC_002794.1 + 183568 0.66 0.835514
Target:  5'- --gAGCCGCcgacacgGGCCuuuaauacggugGGGGCgGAGGGGg -3'
miRNA:   3'- gagUCGGCGa------CUGG------------CCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 111430 0.66 0.835514
Target:  5'- --gAGCCGCcaGAUCGGcAGUCGGGGcGGg -3'
miRNA:   3'- gagUCGGCGa-CUGGCC-UCGGCUCU-CC- -5'
11081 3' -59.9 NC_002794.1 + 125660 0.66 0.827567
Target:  5'- cCUCGGCgCGCUGAaCGGgcucuGGCUGAcGGGc -3'
miRNA:   3'- -GAGUCG-GCGACUgGCC-----UCGGCUcUCC- -5'
11081 3' -59.9 NC_002794.1 + 145628 0.66 0.819459
Target:  5'- gCUCGGcCCGgaGAUCGGAcCCGAGcucgucgucGGGu -3'
miRNA:   3'- -GAGUC-GGCgaCUGGCCUcGGCUC---------UCC- -5'
11081 3' -59.9 NC_002794.1 + 38587 0.66 0.819459
Target:  5'- gUCGGCCGCcuccucCCGGA--CGAGAGGc -3'
miRNA:   3'- gAGUCGGCGacu---GGCCUcgGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 143284 0.66 0.819459
Target:  5'- -cCGGCCGCU---CGGGGUCGGGcGGg -3'
miRNA:   3'- gaGUCGGCGAcugGCCUCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 14624 0.66 0.819459
Target:  5'- --gGGCCGgaGA-CGGGGCCGGGcacGGa -3'
miRNA:   3'- gagUCGGCgaCUgGCCUCGGCUCu--CC- -5'
11081 3' -59.9 NC_002794.1 + 147134 0.66 0.81864
Target:  5'- -aCGGCgGUUcGAgacggccCCGGGGCCGcGAGGg -3'
miRNA:   3'- gaGUCGgCGA-CU-------GGCCUCGGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 143491 0.66 0.811197
Target:  5'- ---uGUCGCUGGCCgcGGGGCUGcagauGAGGa -3'
miRNA:   3'- gaguCGGCGACUGG--CCUCGGCu----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 78678 0.66 0.811197
Target:  5'- cCUCGGCCGCcGGCCGcaugugcGGCCGAcacGGc -3'
miRNA:   3'- -GAGUCGGCGaCUGGCc------UCGGCUcu-CC- -5'
11081 3' -59.9 NC_002794.1 + 145872 0.66 0.811197
Target:  5'- --gGGCCGC-GACCGGA-CCGcGAGa -3'
miRNA:   3'- gagUCGGCGaCUGGCCUcGGCuCUCc -5'
11081 3' -59.9 NC_002794.1 + 94492 0.66 0.811197
Target:  5'- -gCGGCCGCgGGCCGuGGCgGGGAu- -3'
miRNA:   3'- gaGUCGGCGaCUGGCcUCGgCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 121381 0.66 0.809527
Target:  5'- -cCGGCCGCcgccgggaccgcGGCCGGcGCCGGGAc- -3'
miRNA:   3'- gaGUCGGCGa-----------CUGGCCuCGGCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 107073 0.66 0.802788
Target:  5'- ---cGCCGCcGGCauguCGGAGCCGAcgggcGGGGg -3'
miRNA:   3'- gaguCGGCGaCUG----GCCUCGGCU-----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 153418 0.66 0.802788
Target:  5'- ---cGCCGC--GCgCGGAGCCGAGcuGGGc -3'
miRNA:   3'- gaguCGGCGacUG-GCCUCGGCUC--UCC- -5'
11081 3' -59.9 NC_002794.1 + 44220 0.66 0.802788
Target:  5'- gCUCGGgCGCcgagGGCuCGGuGCCGGGcGGc -3'
miRNA:   3'- -GAGUCgGCGa---CUG-GCCuCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 105830 0.66 0.802788
Target:  5'- gUCGGUCGagcGAgCGGGaCCGAGGGGa -3'
miRNA:   3'- gAGUCGGCga-CUgGCCUcGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 44265 0.66 0.791647
Target:  5'- gCUCGGCCGCcggggacgGaggaguccgcgcccGCCGG-GCCGGcGAGGc -3'
miRNA:   3'- -GAGUCGGCGa-------C--------------UGGCCuCGGCU-CUCC- -5'
11081 3' -59.9 NC_002794.1 + 191860 0.67 0.785556
Target:  5'- --uGGUCGUgaaaGGCCGGcGGCgGAGGGGg -3'
miRNA:   3'- gagUCGGCGa---CUGGCC-UCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 92251 0.67 0.785556
Target:  5'- cCUCGGCggcguCGCUGGCggCGGcGCCGGgcGAGGc -3'
miRNA:   3'- -GAGUCG-----GCGACUG--GCCuCGGCU--CUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.