miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11081 3' -59.9 NC_002794.1 + 181930 0.69 0.644723
Target:  5'- -aCGGCCGUcucCCgGGAGCCGcAGAGGc -3'
miRNA:   3'- gaGUCGGCGacuGG-CCUCGGC-UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 71095 0.69 0.673866
Target:  5'- -aCAGCCGgUcGCCGGcggccuGGCCgGAGAGGc -3'
miRNA:   3'- gaGUCGGCgAcUGGCC------UCGG-CUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 157979 0.69 0.673866
Target:  5'- -aCGGagaagCGCucauuUGACCGGAGCCGGuGGGGu -3'
miRNA:   3'- gaGUCg----GCG-----ACUGGCCUCGGCU-CUCC- -5'
11081 3' -59.9 NC_002794.1 + 43240 0.69 0.654456
Target:  5'- -gCAGCgGCaccGGCCGGAacGCCGGGuGGu -3'
miRNA:   3'- gaGUCGgCGa--CUGGCCU--CGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 191811 0.7 0.576717
Target:  5'- gCUCGGCCGCUcgagGACCGcGAGCuCGcucgacGGAGa -3'
miRNA:   3'- -GAGUCGGCGA----CUGGC-CUCG-GC------UCUCc -5'
11081 3' -59.9 NC_002794.1 + 14870 0.7 0.567096
Target:  5'- -cCAGCCGCccgGuucGCCGcGAGCCGAGAc- -3'
miRNA:   3'- gaGUCGGCGa--C---UGGC-CUCGGCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 126707 0.7 0.596059
Target:  5'- ---cGCCGCgGACuCGGGGC-GAGGGGg -3'
miRNA:   3'- gaguCGGCGaCUG-GCCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 113497 0.7 0.586373
Target:  5'- gCUC-GCgCGC-GGCCGaGAGCCGcGGAGGg -3'
miRNA:   3'- -GAGuCG-GCGaCUGGC-CUCGGC-UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 42474 0.7 0.605769
Target:  5'- -cCAuGUCGCgcgcGCCGGGGCCGAGcGGa -3'
miRNA:   3'- gaGU-CGGCGac--UGGCCUCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 104424 0.7 0.615497
Target:  5'- cCUCGGCCGCcGGcCCGGAcGCCGccgcGGGc -3'
miRNA:   3'- -GAGUCGGCGaCU-GGCCU-CGGCuc--UCC- -5'
11081 3' -59.9 NC_002794.1 + 40517 0.7 0.615497
Target:  5'- -aCGGCCGCcgacgcgccGACgGGAGaCGAGGGGg -3'
miRNA:   3'- gaGUCGGCGa--------CUGgCCUCgGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 108459 0.71 0.538504
Target:  5'- -gCGGcCCGCcGGCaCGG-GCCGAGGGGc -3'
miRNA:   3'- gaGUC-GGCGaCUG-GCCuCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 71972 0.71 0.544186
Target:  5'- aUCAGCCggucccgGCgGAgCCGGAGCCGAuaccgccggagcucGAGGa -3'
miRNA:   3'- gAGUCGG-------CGaCU-GGCCUCGGCU--------------CUCC- -5'
11081 3' -59.9 NC_002794.1 + 104265 0.71 0.547985
Target:  5'- -gCAGCCGCUcGGCCGGcaccguGCCGAacAGGa -3'
miRNA:   3'- gaGUCGGCGA-CUGGCCu-----CGGCUc-UCC- -5'
11081 3' -59.9 NC_002794.1 + 44708 0.71 0.558473
Target:  5'- -cCGGCCGCgaccgcggcgacgucGGCCGGcGCCGccGGAGGg -3'
miRNA:   3'- gaGUCGGCGa--------------CUGGCCuCGGC--UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 189626 0.71 0.545135
Target:  5'- aCUCGGCCgacuggcuaGCUGGCUGGcugacuagccggcuGGCCGAGcGGu -3'
miRNA:   3'- -GAGUCGG---------CGACUGGCC--------------UCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 86517 0.72 0.473081
Target:  5'- gCUCcgGGCCGCgcccGACCGGAugccccgggccgaGCCGGGAcGGa -3'
miRNA:   3'- -GAG--UCGGCGa---CUGGCCU-------------CGGCUCU-CC- -5'
11081 3' -59.9 NC_002794.1 + 86565 0.72 0.473081
Target:  5'- gCUCcgGGCCGCgcccGACCGGAuuuuccggaccgaGCCGGGAcGGa -3'
miRNA:   3'- -GAG--UCGGCGa---CUGGCCU-------------CGGCUCU-CC- -5'
11081 3' -59.9 NC_002794.1 + 86205 0.72 0.473081
Target:  5'- gCUCcgGGCCGCgcccGACCGGAuguuccggaccgaGCCGGGAcGGa -3'
miRNA:   3'- -GAG--UCGGCGa---CUGGCCU-------------CGGCUCU-CC- -5'
11081 3' -59.9 NC_002794.1 + 86349 0.72 0.473081
Target:  5'- gCUCcgGGCCGCgcccGACCGGAugccccgggccgaGCCGGGAcGGa -3'
miRNA:   3'- -GAG--UCGGCGa---CUGGCCU-------------CGGCUCU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.