miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11081 3' -59.9 NC_002794.1 + 126707 0.7 0.596059
Target:  5'- ---cGCCGCgGACuCGGGGC-GAGGGGg -3'
miRNA:   3'- gaguCGGCGaCUG-GCCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 104424 0.7 0.615497
Target:  5'- cCUCGGCCGCcGGcCCGGAcGCCGccgcGGGc -3'
miRNA:   3'- -GAGUCGGCGaCU-GGCCU-CGGCuc--UCC- -5'
11081 3' -59.9 NC_002794.1 + 14870 0.7 0.567096
Target:  5'- -cCAGCCGCccgGuucGCCGcGAGCCGAGAc- -3'
miRNA:   3'- gaGUCGGCGa--C---UGGC-CUCGGCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 42474 0.7 0.605769
Target:  5'- -cCAuGUCGCgcgcGCCGGGGCCGAGcGGa -3'
miRNA:   3'- gaGU-CGGCGac--UGGCCUCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 40517 0.7 0.615497
Target:  5'- -aCGGCCGCcgacgcgccGACgGGAGaCGAGGGGg -3'
miRNA:   3'- gaGUCGGCGa--------CUGgCCUCgGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 113497 0.7 0.586373
Target:  5'- gCUC-GCgCGC-GGCCGaGAGCCGcGGAGGg -3'
miRNA:   3'- -GAGuCG-GCGaCUGGC-CUCGGC-UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 71095 0.69 0.673866
Target:  5'- -aCAGCCGgUcGCCGGcggccuGGCCgGAGAGGc -3'
miRNA:   3'- gaGUCGGCgAcUGGCC------UCGG-CUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 43240 0.69 0.654456
Target:  5'- -gCAGCgGCaccGGCCGGAacGCCGGGuGGu -3'
miRNA:   3'- gaGUCGgCGa--CUGGCCU--CGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 157979 0.69 0.673866
Target:  5'- -aCGGagaagCGCucauuUGACCGGAGCCGGuGGGGu -3'
miRNA:   3'- gaGUCg----GCG-----ACUGGCCUCGGCU-CUCC- -5'
11081 3' -59.9 NC_002794.1 + 181930 0.69 0.644723
Target:  5'- -aCGGCCGUcucCCgGGAGCCGcAGAGGc -3'
miRNA:   3'- gaGUCGGCGacuGG-CCUCGGC-UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 115602 0.68 0.73111
Target:  5'- gUCGacCCGCUcGcCCGGcGCCGGGAGGc -3'
miRNA:   3'- gAGUc-GGCGA-CuGGCCuCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 137564 0.68 0.712255
Target:  5'- gUCGcGCCGCcGucgccGCCGGGGCCGGagugcGGGGa -3'
miRNA:   3'- gAGU-CGGCGaC-----UGGCCUCGGCU-----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 115948 0.68 0.721718
Target:  5'- ---cGCCGCgUGucGCCGGGGaCCGuGGGGg -3'
miRNA:   3'- gaguCGGCG-AC--UGGCCUC-GGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 5015 0.68 0.712255
Target:  5'- aCUCGGaCuCGCgu-CCGGGGUgGGGGGGg -3'
miRNA:   3'- -GAGUC-G-GCGacuGGCCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 187472 0.68 0.693153
Target:  5'- gCUCGGCgCGC--GCCGG-GCCGAggacGAGGc -3'
miRNA:   3'- -GAGUCG-GCGacUGGCCuCGGCU----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 32309 0.68 0.683529
Target:  5'- -gCGGCCGCgccGGCCGcGGCCG-GAGa -3'
miRNA:   3'- gaGUCGGCGa--CUGGCcUCGGCuCUCc -5'
11081 3' -59.9 NC_002794.1 + 40056 0.68 0.706548
Target:  5'- aUCAagCGCUGAcucgggggagggaaaCCGGGGCgGGGAGGg -3'
miRNA:   3'- gAGUcgGCGACU---------------GGCCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 181435 0.67 0.749654
Target:  5'- --aAGCCGUcGGCgaGGGGCCGcccGGAGGa -3'
miRNA:   3'- gagUCGGCGaCUGg-CCUCGGC---UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 150032 0.67 0.749654
Target:  5'- -cCGGCCGCcGAgUGGAGCCGcuaccgacugcGGuGGg -3'
miRNA:   3'- gaGUCGGCGaCUgGCCUCGGC-----------UCuCC- -5'
11081 3' -59.9 NC_002794.1 + 110279 0.67 0.75879
Target:  5'- -gCGGCCGCcguccucgGGcCCGaGAGCCGcGGGGa -3'
miRNA:   3'- gaGUCGGCGa-------CU-GGC-CUCGGCuCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.