Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 7148 | 0.67 | 0.784681 |
Target: 5'- -aCAGuuGCgcugacaugUGACCaucuuuguccgguGGGGCUGAGGGGg -3' miRNA: 3'- gaGUCggCG---------ACUGG-------------CCUCGGCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 101569 | 0.67 | 0.784681 |
Target: 5'- -cCGGCgGgaGuGCCGGccgccgcGGCCGGGGGGg -3' miRNA: 3'- gaGUCGgCgaC-UGGCC-------UCGGCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 191860 | 0.67 | 0.785556 |
Target: 5'- --uGGUCGUgaaaGGCCGGcGGCgGAGGGGg -3' miRNA: 3'- gagUCGGCGa---CUGGCC-UCGgCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 156413 | 0.67 | 0.776749 |
Target: 5'- -gCGGCCGCggccacGGCCGGcGGgUGAGAGa -3' miRNA: 3'- gaGUCGGCGa-----CUGGCC-UCgGCUCUCc -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 127603 | 0.67 | 0.75879 |
Target: 5'- -gCGGCCGCUGAgCGGcGCgGAccGGa -3' miRNA: 3'- gaGUCGGCGACUgGCCuCGgCUcuCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 15176 | 0.67 | 0.740425 |
Target: 5'- --gGGCCGUUcGCCGGAGaCCGGGuGa -3' miRNA: 3'- gagUCGGCGAcUGGCCUC-GGCUCuCc -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 181435 | 0.67 | 0.749654 |
Target: 5'- --aAGCCGUcGGCgaGGGGCCGcccGGAGGa -3' miRNA: 3'- gagUCGGCGaCUGg-CCUCGGC---UCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 51242 | 0.67 | 0.774083 |
Target: 5'- -aCGGUCGCUucuagaaggcguggGGgCGG-GCCGGGAGGc -3' miRNA: 3'- gaGUCGGCGA--------------CUgGCCuCGGCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 150032 | 0.67 | 0.749654 |
Target: 5'- -cCGGCCGCcGAgUGGAGCCGcuaccgacugcGGuGGg -3' miRNA: 3'- gaGUCGGCGaCUgGCCUCGGC-----------UCuCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 110279 | 0.67 | 0.75879 |
Target: 5'- -gCGGCCGCcguccucgGGcCCGaGAGCCGcGGGGa -3' miRNA: 3'- gaGUCGGCGa-------CU-GGC-CUCGGCuCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 38122 | 0.67 | 0.75879 |
Target: 5'- --gAGCCGCgccagcuggGGCgUGGAGUCGAGcAGGa -3' miRNA: 3'- gagUCGGCGa--------CUG-GCCUCGGCUC-UCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 51207 | 0.67 | 0.749654 |
Target: 5'- gCUCGcCCGCggagcGGCCGGccGGCCGAuGGGa -3' miRNA: 3'- -GAGUcGGCGa----CUGGCC--UCGGCUcUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 125660 | 0.66 | 0.827567 |
Target: 5'- cCUCGGCgCGCUGAaCGGgcucuGGCUGAcGGGc -3' miRNA: 3'- -GAGUCG-GCGACUgGCC-----UCGGCUcUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 143284 | 0.66 | 0.819459 |
Target: 5'- -cCGGCCGCU---CGGGGUCGGGcGGg -3' miRNA: 3'- gaGUCGGCGAcugGCCUCGGCUCuCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 145872 | 0.66 | 0.811197 |
Target: 5'- --gGGCCGC-GACCGGA-CCGcGAGa -3' miRNA: 3'- gagUCGGCGaCUGGCCUcGGCuCUCc -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 78678 | 0.66 | 0.811197 |
Target: 5'- cCUCGGCCGCcGGCCGcaugugcGGCCGAcacGGc -3' miRNA: 3'- -GAGUCGGCGaCUGGCc------UCGGCUcu-CC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 94492 | 0.66 | 0.811197 |
Target: 5'- -gCGGCCGCgGGCCGuGGCgGGGAu- -3' miRNA: 3'- gaGUCGGCGaCUGGCcUCGgCUCUcc -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 143491 | 0.66 | 0.811197 |
Target: 5'- ---uGUCGCUGGCCgcGGGGCUGcagauGAGGa -3' miRNA: 3'- gaguCGGCGACUGG--CCUCGGCu----CUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 107073 | 0.66 | 0.802788 |
Target: 5'- ---cGCCGCcGGCauguCGGAGCCGAcgggcGGGGg -3' miRNA: 3'- gaguCGGCGaCUG----GCCUCGGCU-----CUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 153418 | 0.66 | 0.802788 |
Target: 5'- ---cGCCGC--GCgCGGAGCCGAGcuGGGc -3' miRNA: 3'- gaguCGGCGacUG-GCCUCGGCUC--UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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