miRNA display CGI


Results 61 - 70 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11081 3' -59.9 NC_002794.1 + 78678 0.66 0.811197
Target:  5'- cCUCGGCCGCcGGCCGcaugugcGGCCGAcacGGc -3'
miRNA:   3'- -GAGUCGGCGaCUGGCc------UCGGCUcu-CC- -5'
11081 3' -59.9 NC_002794.1 + 121381 0.66 0.809527
Target:  5'- -cCGGCCGCcgccgggaccgcGGCCGGcGCCGGGAc- -3'
miRNA:   3'- gaGUCGGCGa-----------CUGGCCuCGGCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 94492 0.66 0.811197
Target:  5'- -gCGGCCGCgGGCCGuGGCgGGGAu- -3'
miRNA:   3'- gaGUCGGCGaCUGGCcUCGgCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 143491 0.66 0.811197
Target:  5'- ---uGUCGCUGGCCgcGGGGCUGcagauGAGGa -3'
miRNA:   3'- gaguCGGCGACUGG--CCUCGGCu----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 107073 0.66 0.802788
Target:  5'- ---cGCCGCcGGCauguCGGAGCCGAcgggcGGGGg -3'
miRNA:   3'- gaguCGGCGaCUG----GCCUCGGCU-----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 153418 0.66 0.802788
Target:  5'- ---cGCCGC--GCgCGGAGCCGAGcuGGGc -3'
miRNA:   3'- gaguCGGCGacUG-GCCUCGGCUC--UCC- -5'
11081 3' -59.9 NC_002794.1 + 44220 0.66 0.802788
Target:  5'- gCUCGGgCGCcgagGGCuCGGuGCCGGGcGGc -3'
miRNA:   3'- -GAGUCgGCGa---CUG-GCCuCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 105830 0.66 0.802788
Target:  5'- gUCGGUCGagcGAgCGGGaCCGAGGGGa -3'
miRNA:   3'- gAGUCGGCga-CUgGCCUcGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 44265 0.66 0.791647
Target:  5'- gCUCGGCCGCcggggacgGaggaguccgcgcccGCCGG-GCCGGcGAGGc -3'
miRNA:   3'- -GAGUCGGCGa-------C--------------UGGCCuCGGCU-CUCC- -5'
11081 3' -59.9 NC_002794.1 + 183568 0.66 0.835514
Target:  5'- --gAGCCGCcgacacgGGCCuuuaauacggugGGGGCgGAGGGGg -3'
miRNA:   3'- gagUCGGCGa------CUGG------------CCUCGgCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.