Results 61 - 70 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 78678 | 0.66 | 0.811197 |
Target: 5'- cCUCGGCCGCcGGCCGcaugugcGGCCGAcacGGc -3' miRNA: 3'- -GAGUCGGCGaCUGGCc------UCGGCUcu-CC- -5' |
|||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 145872 | 0.66 | 0.811197 |
Target: 5'- --gGGCCGC-GACCGGA-CCGcGAGa -3' miRNA: 3'- gagUCGGCGaCUGGCCUcGGCuCUCc -5' |
|||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 147134 | 0.66 | 0.81864 |
Target: 5'- -aCGGCgGUUcGAgacggccCCGGGGCCGcGAGGg -3' miRNA: 3'- gaGUCGgCGA-CU-------GGCCUCGGCuCUCC- -5' |
|||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 145628 | 0.66 | 0.819459 |
Target: 5'- gCUCGGcCCGgaGAUCGGAcCCGAGcucgucgucGGGu -3' miRNA: 3'- -GAGUC-GGCgaCUGGCCUcGGCUC---------UCC- -5' |
|||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 38587 | 0.66 | 0.819459 |
Target: 5'- gUCGGCCGCcuccucCCGGA--CGAGAGGc -3' miRNA: 3'- gAGUCGGCGacu---GGCCUcgGCUCUCC- -5' |
|||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 143284 | 0.66 | 0.819459 |
Target: 5'- -cCGGCCGCU---CGGGGUCGGGcGGg -3' miRNA: 3'- gaGUCGGCGAcugGCCUCGGCUCuCC- -5' |
|||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 14624 | 0.66 | 0.819459 |
Target: 5'- --gGGCCGgaGA-CGGGGCCGGGcacGGa -3' miRNA: 3'- gagUCGGCgaCUgGCCUCGGCUCu--CC- -5' |
|||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 125660 | 0.66 | 0.827567 |
Target: 5'- cCUCGGCgCGCUGAaCGGgcucuGGCUGAcGGGc -3' miRNA: 3'- -GAGUCG-GCGACUgGCC-----UCGGCUcUCC- -5' |
|||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 111430 | 0.66 | 0.835514 |
Target: 5'- --gAGCCGCcaGAUCGGcAGUCGGGGcGGg -3' miRNA: 3'- gagUCGGCGa-CUGGCC-UCGGCUCU-CC- -5' |
|||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 183568 | 0.66 | 0.835514 |
Target: 5'- --gAGCCGCcgacacgGGCCuuuaauacggugGGGGCgGAGGGGg -3' miRNA: 3'- gagUCGGCGa------CUGG------------CCUCGgCUCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home