miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11081 3' -59.9 NC_002794.1 + 7148 0.67 0.784681
Target:  5'- -aCAGuuGCgcugacaugUGACCaucuuuguccgguGGGGCUGAGGGGg -3'
miRNA:   3'- gaGUCggCG---------ACUGG-------------CCUCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 101569 0.67 0.784681
Target:  5'- -cCGGCgGgaGuGCCGGccgccgcGGCCGGGGGGg -3'
miRNA:   3'- gaGUCGgCgaC-UGGCC-------UCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 91589 0.67 0.776749
Target:  5'- aCUCcgaguGGCCGCUGguGCgCGcGGCCGAGGGc -3'
miRNA:   3'- -GAG-----UCGGCGAC--UG-GCcUCGGCUCUCc -5'
11081 3' -59.9 NC_002794.1 + 156413 0.67 0.776749
Target:  5'- -gCGGCCGCggccacGGCCGGcGGgUGAGAGa -3'
miRNA:   3'- gaGUCGGCGa-----CUGGCC-UCgGCUCUCc -5'
11081 3' -59.9 NC_002794.1 + 51242 0.67 0.774083
Target:  5'- -aCGGUCGCUucuagaaggcguggGGgCGG-GCCGGGAGGc -3'
miRNA:   3'- gaGUCGGCGA--------------CUgGCCuCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 127603 0.67 0.75879
Target:  5'- -gCGGCCGCUGAgCGGcGCgGAccGGa -3'
miRNA:   3'- gaGUCGGCGACUgGCCuCGgCUcuCC- -5'
11081 3' -59.9 NC_002794.1 + 38122 0.67 0.75879
Target:  5'- --gAGCCGCgccagcuggGGCgUGGAGUCGAGcAGGa -3'
miRNA:   3'- gagUCGGCGa--------CUG-GCCUCGGCUC-UCC- -5'
11081 3' -59.9 NC_002794.1 + 110279 0.67 0.75879
Target:  5'- -gCGGCCGCcguccucgGGcCCGaGAGCCGcGGGGa -3'
miRNA:   3'- gaGUCGGCGa-------CU-GGC-CUCGGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 150032 0.67 0.749654
Target:  5'- -cCGGCCGCcGAgUGGAGCCGcuaccgacugcGGuGGg -3'
miRNA:   3'- gaGUCGGCGaCUgGCCUCGGC-----------UCuCC- -5'
11081 3' -59.9 NC_002794.1 + 181435 0.67 0.749654
Target:  5'- --aAGCCGUcGGCgaGGGGCCGcccGGAGGa -3'
miRNA:   3'- gagUCGGCGaCUGg-CCUCGGC---UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 86786 0.67 0.749654
Target:  5'- -cCGGCCGCU--CCGGAaCCGAGAccuaGGg -3'
miRNA:   3'- gaGUCGGCGAcuGGCCUcGGCUCU----CC- -5'
11081 3' -59.9 NC_002794.1 + 51207 0.67 0.749654
Target:  5'- gCUCGcCCGCggagcGGCCGGccGGCCGAuGGGa -3'
miRNA:   3'- -GAGUcGGCGa----CUGGCC--UCGGCUcUCC- -5'
11081 3' -59.9 NC_002794.1 + 15176 0.67 0.740425
Target:  5'- --gGGCCGUUcGCCGGAGaCCGGGuGa -3'
miRNA:   3'- gagUCGGCGAcUGGCCUC-GGCUCuCc -5'
11081 3' -59.9 NC_002794.1 + 115602 0.68 0.73111
Target:  5'- gUCGacCCGCUcGcCCGGcGCCGGGAGGc -3'
miRNA:   3'- gAGUc-GGCGA-CuGGCCuCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 115948 0.68 0.721718
Target:  5'- ---cGCCGCgUGucGCCGGGGaCCGuGGGGg -3'
miRNA:   3'- gaguCGGCG-AC--UGGCCUC-GGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 137564 0.68 0.712255
Target:  5'- gUCGcGCCGCcGucgccGCCGGGGCCGGagugcGGGGa -3'
miRNA:   3'- gAGU-CGGCGaC-----UGGCCUCGGCU-----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 5015 0.68 0.712255
Target:  5'- aCUCGGaCuCGCgu-CCGGGGUgGGGGGGg -3'
miRNA:   3'- -GAGUC-G-GCGacuGGCCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 40056 0.68 0.706548
Target:  5'- aUCAagCGCUGAcucgggggagggaaaCCGGGGCgGGGAGGg -3'
miRNA:   3'- gAGUcgGCGACU---------------GGCCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 187472 0.68 0.693153
Target:  5'- gCUCGGCgCGC--GCCGG-GCCGAggacGAGGc -3'
miRNA:   3'- -GAGUCG-GCGacUGGCCuCGGCU----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 32309 0.68 0.683529
Target:  5'- -gCGGCCGCgccGGCCGcGGCCG-GAGa -3'
miRNA:   3'- gaGUCGGCGa--CUGGCcUCGGCuCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.