miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11081 3' -59.9 NC_002794.1 + 5015 0.68 0.712255
Target:  5'- aCUCGGaCuCGCgu-CCGGGGUgGGGGGGg -3'
miRNA:   3'- -GAGUC-G-GCGacuGGCCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 7148 0.67 0.784681
Target:  5'- -aCAGuuGCgcugacaugUGACCaucuuuguccgguGGGGCUGAGGGGg -3'
miRNA:   3'- gaGUCggCG---------ACUGG-------------CCUCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 12508 0.75 0.343272
Target:  5'- --gAGCCGCUcGACCGGcGGCUGGGuGGa -3'
miRNA:   3'- gagUCGGCGA-CUGGCC-UCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 14624 0.66 0.819459
Target:  5'- --gGGCCGgaGA-CGGGGCCGGGcacGGa -3'
miRNA:   3'- gagUCGGCgaCUgGCCUCGGCUCu--CC- -5'
11081 3' -59.9 NC_002794.1 + 14870 0.7 0.567096
Target:  5'- -cCAGCCGCccgGuucGCCGcGAGCCGAGAc- -3'
miRNA:   3'- gaGUCGGCGa--C---UGGC-CUCGGCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 15176 0.67 0.740425
Target:  5'- --gGGCCGUUcGCCGGAGaCCGGGuGa -3'
miRNA:   3'- gagUCGGCGAcUGGCCUC-GGCUCuCc -5'
11081 3' -59.9 NC_002794.1 + 32309 0.68 0.683529
Target:  5'- -gCGGCCGCgccGGCCGcGGCCG-GAGa -3'
miRNA:   3'- gaGUCGGCGa--CUGGCcUCGGCuCUCc -5'
11081 3' -59.9 NC_002794.1 + 32594 0.73 0.405321
Target:  5'- --gGGCCGg-GGCCGGGGCCGGGgccGGGg -3'
miRNA:   3'- gagUCGGCgaCUGGCCUCGGCUC---UCC- -5'
11081 3' -59.9 NC_002794.1 + 38122 0.67 0.75879
Target:  5'- --gAGCCGCgccagcuggGGCgUGGAGUCGAGcAGGa -3'
miRNA:   3'- gagUCGGCGa--------CUG-GCCUCGGCUC-UCC- -5'
11081 3' -59.9 NC_002794.1 + 38587 0.66 0.819459
Target:  5'- gUCGGCCGCcuccucCCGGA--CGAGAGGc -3'
miRNA:   3'- gAGUCGGCGacu---GGCCUcgGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 40056 0.68 0.706548
Target:  5'- aUCAagCGCUGAcucgggggagggaaaCCGGGGCgGGGAGGg -3'
miRNA:   3'- gAGUcgGCGACU---------------GGCCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 40517 0.7 0.615497
Target:  5'- -aCGGCCGCcgacgcgccGACgGGAGaCGAGGGGg -3'
miRNA:   3'- gaGUCGGCGa--------CUGgCCUCgGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 42474 0.7 0.605769
Target:  5'- -cCAuGUCGCgcgcGCCGGGGCCGAGcGGa -3'
miRNA:   3'- gaGU-CGGCGac--UGGCCUCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 43240 0.69 0.654456
Target:  5'- -gCAGCgGCaccGGCCGGAacGCCGGGuGGu -3'
miRNA:   3'- gaGUCGgCGa--CUGGCCU--CGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 44220 0.66 0.802788
Target:  5'- gCUCGGgCGCcgagGGCuCGGuGCCGGGcGGc -3'
miRNA:   3'- -GAGUCgGCGa---CUG-GCCuCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 44265 0.66 0.791647
Target:  5'- gCUCGGCCGCcggggacgGaggaguccgcgcccGCCGG-GCCGGcGAGGc -3'
miRNA:   3'- -GAGUCGGCGa-------C--------------UGGCCuCGGCU-CUCC- -5'
11081 3' -59.9 NC_002794.1 + 44708 0.71 0.558473
Target:  5'- -cCGGCCGCgaccgcggcgacgucGGCCGGcGCCGccGGAGGg -3'
miRNA:   3'- gaGUCGGCGa--------------CUGGCCuCGGC--UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 50587 0.76 0.301414
Target:  5'- -gCGGCgGCUGggugGCCGGcGCCGGGGGGa -3'
miRNA:   3'- gaGUCGgCGAC----UGGCCuCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 51207 0.67 0.749654
Target:  5'- gCUCGcCCGCggagcGGCCGGccGGCCGAuGGGa -3'
miRNA:   3'- -GAGUcGGCGa----CUGGCC--UCGGCUcUCC- -5'
11081 3' -59.9 NC_002794.1 + 51242 0.67 0.774083
Target:  5'- -aCGGUCGCUucuagaaggcguggGGgCGG-GCCGGGAGGc -3'
miRNA:   3'- gaGUCGGCGA--------------CUgGCCuCGGCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.