miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11081 3' -59.9 NC_002794.1 + 110279 0.67 0.75879
Target:  5'- -gCGGCCGCcguccucgGGcCCGaGAGCCGcGGGGa -3'
miRNA:   3'- gaGUCGGCGa-------CU-GGC-CUCGGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 111430 0.66 0.835514
Target:  5'- --gAGCCGCcaGAUCGGcAGUCGGGGcGGg -3'
miRNA:   3'- gagUCGGCGa-CUGGCC-UCGGCUCU-CC- -5'
11081 3' -59.9 NC_002794.1 + 113497 0.7 0.586373
Target:  5'- gCUC-GCgCGC-GGCCGaGAGCCGcGGAGGg -3'
miRNA:   3'- -GAGuCG-GCGaCUGGC-CUCGGC-UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 115602 0.68 0.73111
Target:  5'- gUCGacCCGCUcGcCCGGcGCCGGGAGGc -3'
miRNA:   3'- gAGUc-GGCGA-CuGGCCuCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 115948 0.68 0.721718
Target:  5'- ---cGCCGCgUGucGCCGGGGaCCGuGGGGg -3'
miRNA:   3'- gaguCGGCG-AC--UGGCCUC-GGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 121381 0.66 0.809527
Target:  5'- -cCGGCCGCcgccgggaccgcGGCCGGcGCCGGGAc- -3'
miRNA:   3'- gaGUCGGCGa-----------CUGGCCuCGGCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 125660 0.66 0.827567
Target:  5'- cCUCGGCgCGCUGAaCGGgcucuGGCUGAcGGGc -3'
miRNA:   3'- -GAGUCG-GCGACUgGCC-----UCGGCUcUCC- -5'
11081 3' -59.9 NC_002794.1 + 126707 0.7 0.596059
Target:  5'- ---cGCCGCgGACuCGGGGC-GAGGGGg -3'
miRNA:   3'- gaguCGGCGaCUG-GCCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 127603 0.67 0.75879
Target:  5'- -gCGGCCGCUGAgCGGcGCgGAccGGa -3'
miRNA:   3'- gaGUCGGCGACUgGCCuCGgCUcuCC- -5'
11081 3' -59.9 NC_002794.1 + 130049 0.72 0.501196
Target:  5'- aUCGucGCCGUc-ACCGGAGCCG-GAGGa -3'
miRNA:   3'- gAGU--CGGCGacUGGCCUCGGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 137564 0.68 0.712255
Target:  5'- gUCGcGCCGCcGucgccGCCGGGGCCGGagugcGGGGa -3'
miRNA:   3'- gAGU-CGGCGaC-----UGGCCUCGGCU-----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 143284 0.66 0.819459
Target:  5'- -cCGGCCGCU---CGGGGUCGGGcGGg -3'
miRNA:   3'- gaGUCGGCGAcugGCCUCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 143394 0.73 0.430343
Target:  5'- gUCAGCUGCUgcucGACCGGcgcgGGCCGGGcgaAGGu -3'
miRNA:   3'- gAGUCGGCGA----CUGGCC----UCGGCUC---UCC- -5'
11081 3' -59.9 NC_002794.1 + 143491 0.66 0.811197
Target:  5'- ---uGUCGCUGGCCgcGGGGCUGcagauGAGGa -3'
miRNA:   3'- gaguCGGCGACUGG--CCUCGGCu----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 145628 0.66 0.819459
Target:  5'- gCUCGGcCCGgaGAUCGGAcCCGAGcucgucgucGGGu -3'
miRNA:   3'- -GAGUC-GGCgaCUGGCCUcGGCUC---------UCC- -5'
11081 3' -59.9 NC_002794.1 + 145872 0.66 0.811197
Target:  5'- --gGGCCGC-GACCGGA-CCGcGAGa -3'
miRNA:   3'- gagUCGGCGaCUGGCCUcGGCuCUCc -5'
11081 3' -59.9 NC_002794.1 + 147134 0.66 0.81864
Target:  5'- -aCGGCgGUUcGAgacggccCCGGGGCCGcGAGGg -3'
miRNA:   3'- gaGUCGgCGA-CU-------GGCCUCGGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 147203 0.75 0.321835
Target:  5'- aCUCuuGCCGUcgGGCCGGGGCCGGGGc- -3'
miRNA:   3'- -GAGu-CGGCGa-CUGGCCUCGGCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 150032 0.67 0.749654
Target:  5'- -cCGGCCGCcGAgUGGAGCCGcuaccgacugcGGuGGg -3'
miRNA:   3'- gaGUCGGCGaCUgGCCUCGGC-----------UCuCC- -5'
11081 3' -59.9 NC_002794.1 + 153418 0.66 0.802788
Target:  5'- ---cGCCGC--GCgCGGAGCCGAGcuGGGc -3'
miRNA:   3'- gaguCGGCGacUG-GCCUCGGCUC--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.