miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11081 3' -59.9 NC_002794.1 + 191860 0.67 0.785556
Target:  5'- --uGGUCGUgaaaGGCCGGcGGCgGAGGGGg -3'
miRNA:   3'- gagUCGGCGa---CUGGCC-UCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 191811 0.7 0.576717
Target:  5'- gCUCGGCCGCUcgagGACCGcGAGCuCGcucgacGGAGa -3'
miRNA:   3'- -GAGUCGGCGA----CUGGC-CUCG-GC------UCUCc -5'
11081 3' -59.9 NC_002794.1 + 189626 0.71 0.545135
Target:  5'- aCUCGGCCgacuggcuaGCUGGCUGGcugacuagccggcuGGCCGAGcGGu -3'
miRNA:   3'- -GAGUCGG---------CGACUGGCC--------------UCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 187472 0.68 0.693153
Target:  5'- gCUCGGCgCGC--GCCGG-GCCGAggacGAGGc -3'
miRNA:   3'- -GAGUCG-GCGacUGGCCuCGGCU----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 183568 0.66 0.835514
Target:  5'- --gAGCCGCcgacacgGGCCuuuaauacggugGGGGCgGAGGGGg -3'
miRNA:   3'- gagUCGGCGa------CUGG------------CCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 181930 0.69 0.644723
Target:  5'- -aCGGCCGUcucCCgGGAGCCGcAGAGGc -3'
miRNA:   3'- gaGUCGGCGacuGG-CCUCGGC-UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 181435 0.67 0.749654
Target:  5'- --aAGCCGUcGGCgaGGGGCCGcccGGAGGa -3'
miRNA:   3'- gagUCGGCGaCUGg-CCUCGGC---UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 180908 0.76 0.294833
Target:  5'- aCUCGGCCGCggucucGCCGGcGCCGucGGAGGu -3'
miRNA:   3'- -GAGUCGGCGac----UGGCCuCGGC--UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 157979 0.69 0.673866
Target:  5'- -aCGGagaagCGCucauuUGACCGGAGCCGGuGGGGu -3'
miRNA:   3'- gaGUCg----GCG-----ACUGGCCUCGGCU-CUCC- -5'
11081 3' -59.9 NC_002794.1 + 156413 0.67 0.776749
Target:  5'- -gCGGCCGCggccacGGCCGGcGGgUGAGAGa -3'
miRNA:   3'- gaGUCGGCGa-----CUGGCC-UCgGCUCUCc -5'
11081 3' -59.9 NC_002794.1 + 153418 0.66 0.802788
Target:  5'- ---cGCCGC--GCgCGGAGCCGAGcuGGGc -3'
miRNA:   3'- gaguCGGCGacUG-GCCUCGGCUC--UCC- -5'
11081 3' -59.9 NC_002794.1 + 150032 0.67 0.749654
Target:  5'- -cCGGCCGCcGAgUGGAGCCGcuaccgacugcGGuGGg -3'
miRNA:   3'- gaGUCGGCGaCUgGCCUCGGC-----------UCuCC- -5'
11081 3' -59.9 NC_002794.1 + 147203 0.75 0.321835
Target:  5'- aCUCuuGCCGUcgGGCCGGGGCCGGGGc- -3'
miRNA:   3'- -GAGu-CGGCGa-CUGGCCUCGGCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 147134 0.66 0.81864
Target:  5'- -aCGGCgGUUcGAgacggccCCGGGGCCGcGAGGg -3'
miRNA:   3'- gaGUCGgCGA-CU-------GGCCUCGGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 145872 0.66 0.811197
Target:  5'- --gGGCCGC-GACCGGA-CCGcGAGa -3'
miRNA:   3'- gagUCGGCGaCUGGCCUcGGCuCUCc -5'
11081 3' -59.9 NC_002794.1 + 145628 0.66 0.819459
Target:  5'- gCUCGGcCCGgaGAUCGGAcCCGAGcucgucgucGGGu -3'
miRNA:   3'- -GAGUC-GGCgaCUGGCCUcGGCUC---------UCC- -5'
11081 3' -59.9 NC_002794.1 + 143491 0.66 0.811197
Target:  5'- ---uGUCGCUGGCCgcGGGGCUGcagauGAGGa -3'
miRNA:   3'- gaguCGGCGACUGG--CCUCGGCu----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 143394 0.73 0.430343
Target:  5'- gUCAGCUGCUgcucGACCGGcgcgGGCCGGGcgaAGGu -3'
miRNA:   3'- gAGUCGGCGA----CUGGCC----UCGGCUC---UCC- -5'
11081 3' -59.9 NC_002794.1 + 143284 0.66 0.819459
Target:  5'- -cCGGCCGCU---CGGGGUCGGGcGGg -3'
miRNA:   3'- gaGUCGGCGAcugGCCUCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 137564 0.68 0.712255
Target:  5'- gUCGcGCCGCcGucgccGCCGGGGCCGGagugcGGGGa -3'
miRNA:   3'- gAGU-CGGCGaC-----UGGCCUCGGCU-----CUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.