miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11081 3' -59.9 NC_002794.1 + 130049 0.72 0.501196
Target:  5'- aUCGucGCCGUc-ACCGGAGCCG-GAGGa -3'
miRNA:   3'- gAGU--CGGCGacUGGCCUCGGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 127603 0.67 0.75879
Target:  5'- -gCGGCCGCUGAgCGGcGCgGAccGGa -3'
miRNA:   3'- gaGUCGGCGACUgGCCuCGgCUcuCC- -5'
11081 3' -59.9 NC_002794.1 + 126707 0.7 0.596059
Target:  5'- ---cGCCGCgGACuCGGGGC-GAGGGGg -3'
miRNA:   3'- gaguCGGCGaCUG-GCCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 125660 0.66 0.827567
Target:  5'- cCUCGGCgCGCUGAaCGGgcucuGGCUGAcGGGc -3'
miRNA:   3'- -GAGUCG-GCGACUgGCC-----UCGGCUcUCC- -5'
11081 3' -59.9 NC_002794.1 + 121381 0.66 0.809527
Target:  5'- -cCGGCCGCcgccgggaccgcGGCCGGcGCCGGGAc- -3'
miRNA:   3'- gaGUCGGCGa-----------CUGGCCuCGGCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 115948 0.68 0.721718
Target:  5'- ---cGCCGCgUGucGCCGGGGaCCGuGGGGg -3'
miRNA:   3'- gaguCGGCG-AC--UGGCCUC-GGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 115602 0.68 0.73111
Target:  5'- gUCGacCCGCUcGcCCGGcGCCGGGAGGc -3'
miRNA:   3'- gAGUc-GGCGA-CuGGCCuCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 113497 0.7 0.586373
Target:  5'- gCUC-GCgCGC-GGCCGaGAGCCGcGGAGGg -3'
miRNA:   3'- -GAGuCG-GCGaCUGGC-CUCGGC-UCUCC- -5'
11081 3' -59.9 NC_002794.1 + 111430 0.66 0.835514
Target:  5'- --gAGCCGCcaGAUCGGcAGUCGGGGcGGg -3'
miRNA:   3'- gagUCGGCGa-CUGGCC-UCGGCUCU-CC- -5'
11081 3' -59.9 NC_002794.1 + 110279 0.67 0.75879
Target:  5'- -gCGGCCGCcguccucgGGcCCGaGAGCCGcGGGGa -3'
miRNA:   3'- gaGUCGGCGa-------CU-GGC-CUCGGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 108459 0.71 0.538504
Target:  5'- -gCGGcCCGCcGGCaCGG-GCCGAGGGGc -3'
miRNA:   3'- gaGUC-GGCGaCUG-GCCuCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 107073 0.66 0.802788
Target:  5'- ---cGCCGCcGGCauguCGGAGCCGAcgggcGGGGg -3'
miRNA:   3'- gaguCGGCGaCUG----GCCUCGGCU-----CUCC- -5'
11081 3' -59.9 NC_002794.1 + 105830 0.66 0.802788
Target:  5'- gUCGGUCGagcGAgCGGGaCCGAGGGGa -3'
miRNA:   3'- gAGUCGGCga-CUgGCCUcGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 104424 0.7 0.615497
Target:  5'- cCUCGGCCGCcGGcCCGGAcGCCGccgcGGGc -3'
miRNA:   3'- -GAGUCGGCGaCU-GGCCU-CGGCuc--UCC- -5'
11081 3' -59.9 NC_002794.1 + 104265 0.71 0.547985
Target:  5'- -gCAGCCGCUcGGCCGGcaccguGCCGAacAGGa -3'
miRNA:   3'- gaGUCGGCGA-CUGGCCu-----CGGCUc-UCC- -5'
11081 3' -59.9 NC_002794.1 + 101569 0.67 0.784681
Target:  5'- -cCGGCgGgaGuGCCGGccgccgcGGCCGGGGGGg -3'
miRNA:   3'- gaGUCGgCgaC-UGGCC-------UCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 95770 0.76 0.282007
Target:  5'- -gCGGCCGCgacggcGGCCGGGGC-GAGAGGc -3'
miRNA:   3'- gaGUCGGCGa-----CUGGCCUCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 94492 0.66 0.811197
Target:  5'- -gCGGCCGCgGGCCGuGGCgGGGAu- -3'
miRNA:   3'- gaGUCGGCGaCUGGCcUCGgCUCUcc -5'
11081 3' -59.9 NC_002794.1 + 92251 0.67 0.785556
Target:  5'- cCUCGGCggcguCGCUGGCggCGGcGCCGGgcGAGGc -3'
miRNA:   3'- -GAGUCG-----GCGACUG--GCCuCGGCU--CUCC- -5'
11081 3' -59.9 NC_002794.1 + 91589 0.67 0.776749
Target:  5'- aCUCcgaguGGCCGCUGguGCgCGcGGCCGAGGGc -3'
miRNA:   3'- -GAG-----UCGGCGAC--UG-GCcUCGGCUCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.