Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 86786 | 0.67 | 0.749654 |
Target: 5'- -cCGGCCGCU--CCGGAaCCGAGAccuaGGg -3' miRNA: 3'- gaGUCGGCGAcuGGCCUcGGCUCU----CC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 86565 | 0.72 | 0.473081 |
Target: 5'- gCUCcgGGCCGCgcccGACCGGAuuuuccggaccgaGCCGGGAcGGa -3' miRNA: 3'- -GAG--UCGGCGa---CUGGCCU-------------CGGCUCU-CC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 86517 | 0.72 | 0.473081 |
Target: 5'- gCUCcgGGCCGCgcccGACCGGAugccccgggccgaGCCGGGAcGGa -3' miRNA: 3'- -GAG--UCGGCGa---CUGGCCU-------------CGGCUCU-CC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 86397 | 0.72 | 0.473081 |
Target: 5'- gCUCcgGGCCGCgcccGACCGGAuguuccggaccgaGCCGGGAcGGa -3' miRNA: 3'- -GAG--UCGGCGa---CUGGCCU-------------CGGCUCU-CC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 86349 | 0.72 | 0.473081 |
Target: 5'- gCUCcgGGCCGCgcccGACCGGAugccccgggccgaGCCGGGAcGGa -3' miRNA: 3'- -GAG--UCGGCGa---CUGGCCU-------------CGGCUCU-CC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 86205 | 0.72 | 0.473081 |
Target: 5'- gCUCcgGGCCGCgcccGACCGGAuguuccggaccgaGCCGGGAcGGa -3' miRNA: 3'- -GAG--UCGGCGa---CUGGCCU-------------CGGCUCU-CC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 78678 | 0.66 | 0.811197 |
Target: 5'- cCUCGGCCGCcGGCCGcaugugcGGCCGAcacGGc -3' miRNA: 3'- -GAGUCGGCGaCUGGCc------UCGGCUcu-CC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 71972 | 0.71 | 0.544186 |
Target: 5'- aUCAGCCggucccgGCgGAgCCGGAGCCGAuaccgccggagcucGAGGa -3' miRNA: 3'- gAGUCGG-------CGaCU-GGCCUCGGCU--------------CUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 71095 | 0.69 | 0.673866 |
Target: 5'- -aCAGCCGgUcGCCGGcggccuGGCCgGAGAGGc -3' miRNA: 3'- gaGUCGGCgAcUGGCC------UCGG-CUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 70273 | 0.77 | 0.263605 |
Target: 5'- --aGGCCGCgaaGGCCGGAgagcagGCCGGGGGGg -3' miRNA: 3'- gagUCGGCGa--CUGGCCU------CGGCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 51242 | 0.67 | 0.774083 |
Target: 5'- -aCGGUCGCUucuagaaggcguggGGgCGG-GCCGGGAGGc -3' miRNA: 3'- gaGUCGGCGA--------------CUgGCCuCGGCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 51207 | 0.67 | 0.749654 |
Target: 5'- gCUCGcCCGCggagcGGCCGGccGGCCGAuGGGa -3' miRNA: 3'- -GAGUcGGCGa----CUGGCC--UCGGCUcUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 50587 | 0.76 | 0.301414 |
Target: 5'- -gCGGCgGCUGggugGCCGGcGCCGGGGGGa -3' miRNA: 3'- gaGUCGgCGAC----UGGCCuCGGCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 44708 | 0.71 | 0.558473 |
Target: 5'- -cCGGCCGCgaccgcggcgacgucGGCCGGcGCCGccGGAGGg -3' miRNA: 3'- gaGUCGGCGa--------------CUGGCCuCGGC--UCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 44265 | 0.66 | 0.791647 |
Target: 5'- gCUCGGCCGCcggggacgGaggaguccgcgcccGCCGG-GCCGGcGAGGc -3' miRNA: 3'- -GAGUCGGCGa-------C--------------UGGCCuCGGCU-CUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 44220 | 0.66 | 0.802788 |
Target: 5'- gCUCGGgCGCcgagGGCuCGGuGCCGGGcGGc -3' miRNA: 3'- -GAGUCgGCGa---CUG-GCCuCGGCUCuCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 43240 | 0.69 | 0.654456 |
Target: 5'- -gCAGCgGCaccGGCCGGAacGCCGGGuGGu -3' miRNA: 3'- gaGUCGgCGa--CUGGCCU--CGGCUCuCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 42474 | 0.7 | 0.605769 |
Target: 5'- -cCAuGUCGCgcgcGCCGGGGCCGAGcGGa -3' miRNA: 3'- gaGU-CGGCGac--UGGCCUCGGCUCuCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 40517 | 0.7 | 0.615497 |
Target: 5'- -aCGGCCGCcgacgcgccGACgGGAGaCGAGGGGg -3' miRNA: 3'- gaGUCGGCGa--------CUGgCCUCgGCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 40056 | 0.68 | 0.706548 |
Target: 5'- aUCAagCGCUGAcucgggggagggaaaCCGGGGCgGGGAGGg -3' miRNA: 3'- gAGUcgGCGACU---------------GGCCUCGgCUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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