Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11081 | 3' | -59.9 | NC_002794.1 | + | 38587 | 0.66 | 0.819459 |
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Target: 5'- gUCGGCCGCcuccucCCGGA--CGAGAGGc -3' miRNA: 3'- gAGUCGGCGacu---GGCCUcgGCUCUCC- -5' |
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| 11081 | 3' | -59.9 | NC_002794.1 | + | 38122 | 0.67 | 0.75879 |
|
Target: 5'- --gAGCCGCgccagcuggGGCgUGGAGUCGAGcAGGa -3' miRNA: 3'- gagUCGGCGa--------CUG-GCCUCGGCUC-UCC- -5' |
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| 11081 | 3' | -59.9 | NC_002794.1 | + | 32594 | 0.73 | 0.405321 |
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Target: 5'- --gGGCCGg-GGCCGGGGCCGGGgccGGGg -3' miRNA: 3'- gagUCGGCgaCUGGCCUCGGCUC---UCC- -5' |
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| 11081 | 3' | -59.9 | NC_002794.1 | + | 32309 | 0.68 | 0.683529 |
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Target: 5'- -gCGGCCGCgccGGCCGcGGCCG-GAGa -3' miRNA: 3'- gaGUCGGCGa--CUGGCcUCGGCuCUCc -5' |
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| 11081 | 3' | -59.9 | NC_002794.1 | + | 15176 | 0.67 | 0.740425 |
|
Target: 5'- --gGGCCGUUcGCCGGAGaCCGGGuGa -3' miRNA: 3'- gagUCGGCGAcUGGCCUC-GGCUCuCc -5' |
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| 11081 | 3' | -59.9 | NC_002794.1 | + | 14870 | 0.7 | 0.567096 |
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Target: 5'- -cCAGCCGCccgGuucGCCGcGAGCCGAGAc- -3' miRNA: 3'- gaGUCGGCGa--C---UGGC-CUCGGCUCUcc -5' |
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| 11081 | 3' | -59.9 | NC_002794.1 | + | 14624 | 0.66 | 0.819459 |
|
Target: 5'- --gGGCCGgaGA-CGGGGCCGGGcacGGa -3' miRNA: 3'- gagUCGGCgaCUgGCCUCGGCUCu--CC- -5' |
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| 11081 | 3' | -59.9 | NC_002794.1 | + | 12508 | 0.75 | 0.343272 |
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Target: 5'- --gAGCCGCUcGACCGGcGGCUGGGuGGa -3' miRNA: 3'- gagUCGGCGA-CUGGCC-UCGGCUCuCC- -5' |
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| 11081 | 3' | -59.9 | NC_002794.1 | + | 7148 | 0.67 | 0.784681 |
|
Target: 5'- -aCAGuuGCgcugacaugUGACCaucuuuguccgguGGGGCUGAGGGGg -3' miRNA: 3'- gaGUCggCG---------ACUGG-------------CCUCGGCUCUCC- -5' |
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| 11081 | 3' | -59.9 | NC_002794.1 | + | 5015 | 0.68 | 0.712255 |
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Target: 5'- aCUCGGaCuCGCgu-CCGGGGUgGGGGGGg -3' miRNA: 3'- -GAGUC-G-GCGacuGGCCUCGgCUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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