Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11081 | 3' | -59.9 | NC_002794.1 | + | 143284 | 0.66 | 0.819459 |
Target: 5'- -cCGGCCGCU---CGGGGUCGGGcGGg -3' miRNA: 3'- gaGUCGGCGAcugGCCUCGGCUCuCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 38587 | 0.66 | 0.819459 |
Target: 5'- gUCGGCCGCcuccucCCGGA--CGAGAGGc -3' miRNA: 3'- gAGUCGGCGacu---GGCCUcgGCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 145628 | 0.66 | 0.819459 |
Target: 5'- gCUCGGcCCGgaGAUCGGAcCCGAGcucgucgucGGGu -3' miRNA: 3'- -GAGUC-GGCgaCUGGCCUcGGCUC---------UCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 125660 | 0.66 | 0.827567 |
Target: 5'- cCUCGGCgCGCUGAaCGGgcucuGGCUGAcGGGc -3' miRNA: 3'- -GAGUCG-GCGACUgGCC-----UCGGCUcUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 111430 | 0.66 | 0.835514 |
Target: 5'- --gAGCCGCcaGAUCGGcAGUCGGGGcGGg -3' miRNA: 3'- gagUCGGCGa-CUGGCC-UCGGCUCU-CC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 153418 | 0.66 | 0.802788 |
Target: 5'- ---cGCCGC--GCgCGGAGCCGAGcuGGGc -3' miRNA: 3'- gaguCGGCGacUG-GCCUCGGCUC--UCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 44220 | 0.66 | 0.802788 |
Target: 5'- gCUCGGgCGCcgagGGCuCGGuGCCGGGcGGc -3' miRNA: 3'- -GAGUCgGCGa---CUG-GCCuCGGCUCuCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 150032 | 0.67 | 0.749654 |
Target: 5'- -cCGGCCGCcGAgUGGAGCCGcuaccgacugcGGuGGg -3' miRNA: 3'- gaGUCGGCGaCUgGCCUCGGC-----------UCuCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 110279 | 0.67 | 0.75879 |
Target: 5'- -gCGGCCGCcguccucgGGcCCGaGAGCCGcGGGGa -3' miRNA: 3'- gaGUCGGCGa-------CU-GGC-CUCGGCuCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 38122 | 0.67 | 0.75879 |
Target: 5'- --gAGCCGCgccagcuggGGCgUGGAGUCGAGcAGGa -3' miRNA: 3'- gagUCGGCGa--------CUG-GCCUCGGCUC-UCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 127603 | 0.67 | 0.75879 |
Target: 5'- -gCGGCCGCUGAgCGGcGCgGAccGGa -3' miRNA: 3'- gaGUCGGCGACUgGCCuCGgCUcuCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 91589 | 0.67 | 0.776749 |
Target: 5'- aCUCcgaguGGCCGCUGguGCgCGcGGCCGAGGGc -3' miRNA: 3'- -GAG-----UCGGCGAC--UG-GCcUCGGCUCUCc -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 51242 | 0.67 | 0.774083 |
Target: 5'- -aCGGUCGCUucuagaaggcguggGGgCGG-GCCGGGAGGc -3' miRNA: 3'- gaGUCGGCGA--------------CUgGCCuCGGCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 101569 | 0.67 | 0.784681 |
Target: 5'- -cCGGCgGgaGuGCCGGccgccgcGGCCGGGGGGg -3' miRNA: 3'- gaGUCGgCgaC-UGGCC-------UCGGCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 7148 | 0.67 | 0.784681 |
Target: 5'- -aCAGuuGCgcugacaugUGACCaucuuuguccgguGGGGCUGAGGGGg -3' miRNA: 3'- gaGUCggCG---------ACUGG-------------CCUCGGCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 156413 | 0.67 | 0.776749 |
Target: 5'- -gCGGCCGCggccacGGCCGGcGGgUGAGAGa -3' miRNA: 3'- gaGUCGGCGa-----CUGGCC-UCgGCUCUCc -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 92251 | 0.67 | 0.785556 |
Target: 5'- cCUCGGCggcguCGCUGGCggCGGcGCCGGgcGAGGc -3' miRNA: 3'- -GAGUCG-----GCGACUG--GCCuCGGCU--CUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 191860 | 0.67 | 0.785556 |
Target: 5'- --uGGUCGUgaaaGGCCGGcGGCgGAGGGGg -3' miRNA: 3'- gagUCGGCGa---CUGGCC-UCGgCUCUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 44265 | 0.66 | 0.791647 |
Target: 5'- gCUCGGCCGCcggggacgGaggaguccgcgcccGCCGG-GCCGGcGAGGc -3' miRNA: 3'- -GAGUCGGCGa-------C--------------UGGCCuCGGCU-CUCC- -5' |
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11081 | 3' | -59.9 | NC_002794.1 | + | 105830 | 0.66 | 0.802788 |
Target: 5'- gUCGGUCGagcGAgCGGGaCCGAGGGGa -3' miRNA: 3'- gAGUCGGCga-CUgGCCUcGGCUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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