miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11081 3' -59.9 NC_002794.1 + 143284 0.66 0.819459
Target:  5'- -cCGGCCGCU---CGGGGUCGGGcGGg -3'
miRNA:   3'- gaGUCGGCGAcugGCCUCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 38587 0.66 0.819459
Target:  5'- gUCGGCCGCcuccucCCGGA--CGAGAGGc -3'
miRNA:   3'- gAGUCGGCGacu---GGCCUcgGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 145628 0.66 0.819459
Target:  5'- gCUCGGcCCGgaGAUCGGAcCCGAGcucgucgucGGGu -3'
miRNA:   3'- -GAGUC-GGCgaCUGGCCUcGGCUC---------UCC- -5'
11081 3' -59.9 NC_002794.1 + 125660 0.66 0.827567
Target:  5'- cCUCGGCgCGCUGAaCGGgcucuGGCUGAcGGGc -3'
miRNA:   3'- -GAGUCG-GCGACUgGCC-----UCGGCUcUCC- -5'
11081 3' -59.9 NC_002794.1 + 111430 0.66 0.835514
Target:  5'- --gAGCCGCcaGAUCGGcAGUCGGGGcGGg -3'
miRNA:   3'- gagUCGGCGa-CUGGCC-UCGGCUCU-CC- -5'
11081 3' -59.9 NC_002794.1 + 153418 0.66 0.802788
Target:  5'- ---cGCCGC--GCgCGGAGCCGAGcuGGGc -3'
miRNA:   3'- gaguCGGCGacUG-GCCUCGGCUC--UCC- -5'
11081 3' -59.9 NC_002794.1 + 44220 0.66 0.802788
Target:  5'- gCUCGGgCGCcgagGGCuCGGuGCCGGGcGGc -3'
miRNA:   3'- -GAGUCgGCGa---CUG-GCCuCGGCUCuCC- -5'
11081 3' -59.9 NC_002794.1 + 150032 0.67 0.749654
Target:  5'- -cCGGCCGCcGAgUGGAGCCGcuaccgacugcGGuGGg -3'
miRNA:   3'- gaGUCGGCGaCUgGCCUCGGC-----------UCuCC- -5'
11081 3' -59.9 NC_002794.1 + 110279 0.67 0.75879
Target:  5'- -gCGGCCGCcguccucgGGcCCGaGAGCCGcGGGGa -3'
miRNA:   3'- gaGUCGGCGa-------CU-GGC-CUCGGCuCUCC- -5'
11081 3' -59.9 NC_002794.1 + 38122 0.67 0.75879
Target:  5'- --gAGCCGCgccagcuggGGCgUGGAGUCGAGcAGGa -3'
miRNA:   3'- gagUCGGCGa--------CUG-GCCUCGGCUC-UCC- -5'
11081 3' -59.9 NC_002794.1 + 127603 0.67 0.75879
Target:  5'- -gCGGCCGCUGAgCGGcGCgGAccGGa -3'
miRNA:   3'- gaGUCGGCGACUgGCCuCGgCUcuCC- -5'
11081 3' -59.9 NC_002794.1 + 91589 0.67 0.776749
Target:  5'- aCUCcgaguGGCCGCUGguGCgCGcGGCCGAGGGc -3'
miRNA:   3'- -GAG-----UCGGCGAC--UG-GCcUCGGCUCUCc -5'
11081 3' -59.9 NC_002794.1 + 51242 0.67 0.774083
Target:  5'- -aCGGUCGCUucuagaaggcguggGGgCGG-GCCGGGAGGc -3'
miRNA:   3'- gaGUCGGCGA--------------CUgGCCuCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 101569 0.67 0.784681
Target:  5'- -cCGGCgGgaGuGCCGGccgccgcGGCCGGGGGGg -3'
miRNA:   3'- gaGUCGgCgaC-UGGCC-------UCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 7148 0.67 0.784681
Target:  5'- -aCAGuuGCgcugacaugUGACCaucuuuguccgguGGGGCUGAGGGGg -3'
miRNA:   3'- gaGUCggCG---------ACUGG-------------CCUCGGCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 156413 0.67 0.776749
Target:  5'- -gCGGCCGCggccacGGCCGGcGGgUGAGAGa -3'
miRNA:   3'- gaGUCGGCGa-----CUGGCC-UCgGCUCUCc -5'
11081 3' -59.9 NC_002794.1 + 92251 0.67 0.785556
Target:  5'- cCUCGGCggcguCGCUGGCggCGGcGCCGGgcGAGGc -3'
miRNA:   3'- -GAGUCG-----GCGACUG--GCCuCGGCU--CUCC- -5'
11081 3' -59.9 NC_002794.1 + 191860 0.67 0.785556
Target:  5'- --uGGUCGUgaaaGGCCGGcGGCgGAGGGGg -3'
miRNA:   3'- gagUCGGCGa---CUGGCC-UCGgCUCUCC- -5'
11081 3' -59.9 NC_002794.1 + 44265 0.66 0.791647
Target:  5'- gCUCGGCCGCcggggacgGaggaguccgcgcccGCCGG-GCCGGcGAGGc -3'
miRNA:   3'- -GAGUCGGCGa-------C--------------UGGCCuCGGCU-CUCC- -5'
11081 3' -59.9 NC_002794.1 + 105830 0.66 0.802788
Target:  5'- gUCGGUCGagcGAgCGGGaCCGAGGGGa -3'
miRNA:   3'- gAGUCGGCga-CUgGCCUcGGCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.