miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11081 5' -57.2 NC_002794.1 + 16201 0.66 0.894658
Target:  5'- gUCCCGCCUggGCacggUCgaGGUCcGGCGGg- -3'
miRNA:   3'- -AGGGUGGAa-CGa---AGa-CCAG-CCGUCga -5'
11081 5' -57.2 NC_002794.1 + 108514 0.66 0.888039
Target:  5'- cUCCgugGCCUUGCgccacggcCUGaUCGGCAGCg -3'
miRNA:   3'- -AGGg--UGGAACGaa------GACcAGCCGUCGa -5'
11081 5' -57.2 NC_002794.1 + 101785 0.66 0.881201
Target:  5'- aUCCUGuCCgagUGCUgcgccgCUGGUUGGCgcAGCg -3'
miRNA:   3'- -AGGGU-GGa--ACGAa-----GACCAGCCG--UCGa -5'
11081 5' -57.2 NC_002794.1 + 64981 0.66 0.866882
Target:  5'- gCCUACCgccccaGCUgcaCUGG-CGGCAGUg -3'
miRNA:   3'- aGGGUGGaa----CGAa--GACCaGCCGUCGa -5'
11081 5' -57.2 NC_002794.1 + 178642 0.67 0.859412
Target:  5'- --gUACCg-GCUuUCUGGUCGGCGGUc -3'
miRNA:   3'- aggGUGGaaCGA-AGACCAGCCGUCGa -5'
11081 5' -57.2 NC_002794.1 + 127082 0.67 0.851742
Target:  5'- gCCCGCCggacCggCUGGagagCGGCGGCUc -3'
miRNA:   3'- aGGGUGGaac-GaaGACCa---GCCGUCGA- -5'
11081 5' -57.2 NC_002794.1 + 134069 0.67 0.843878
Target:  5'- aCCCAUCUacUGC-UCUGGUCGGaCGaCUc -3'
miRNA:   3'- aGGGUGGA--ACGaAGACCAGCC-GUcGA- -5'
11081 5' -57.2 NC_002794.1 + 86831 0.67 0.827595
Target:  5'- cCUCGCCg-GgaUCgGGUCGGCGGCc -3'
miRNA:   3'- aGGGUGGaaCgaAGaCCAGCCGUCGa -5'
11081 5' -57.2 NC_002794.1 + 152413 0.68 0.819191
Target:  5'- gCCgACC-UGCUgccccgggccgUCU-GUCGGCAGCUg -3'
miRNA:   3'- aGGgUGGaACGA-----------AGAcCAGCCGUCGA- -5'
11081 5' -57.2 NC_002794.1 + 98981 0.68 0.819191
Target:  5'- --gCGCCgugGCcUCggUGGUCGGCGGCUu -3'
miRNA:   3'- aggGUGGaa-CGaAG--ACCAGCCGUCGA- -5'
11081 5' -57.2 NC_002794.1 + 144750 0.68 0.810621
Target:  5'- uUUCCACCggUGgUUCUGGgaacGCAGCUg -3'
miRNA:   3'- -AGGGUGGa-ACgAAGACCagc-CGUCGA- -5'
11081 5' -57.2 NC_002794.1 + 57411 0.7 0.677959
Target:  5'- gCCCGCgUggccgGCgugCUGGUCGGCacGGCg -3'
miRNA:   3'- aGGGUGgAa----CGaa-GACCAGCCG--UCGa -5'
11081 5' -57.2 NC_002794.1 + 62682 0.71 0.627592
Target:  5'- -aCCGCCUgcgggUGCagCUGuGUCGGCGGCc -3'
miRNA:   3'- agGGUGGA-----ACGaaGAC-CAGCCGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.