miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 71236 0.66 0.723012
Target:  5'- -aGUGGC-GGCCggCGUggacCGGCACGUa -3'
miRNA:   3'- gcCGCCGuCCGGgaGCAa---GCCGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 74073 0.66 0.723012
Target:  5'- aGGUGGC-GGCCCUCcucgccgagUCGGgACa- -3'
miRNA:   3'- gCCGCCGuCCGGGAGca-------AGCCgUGca -5'
11083 5' -62.3 NC_002794.1 + 60646 0.66 0.723012
Target:  5'- cCGGCGGCGccGGCCacc---CGGCGCGc -3'
miRNA:   3'- -GCCGCCGU--CCGGgagcaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 16221 0.66 0.723012
Target:  5'- aGGUccGGCGGGUCaggUCGggCuGGCACGUc -3'
miRNA:   3'- gCCG--CCGUCCGGg--AGCaaG-CCGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 63477 0.66 0.723012
Target:  5'- aGGCGGCGGccGCCgUCGacgacgccgCGGCGuCGUc -3'
miRNA:   3'- gCCGCCGUC--CGGgAGCaa-------GCCGU-GCA- -5'
11083 5' -62.3 NC_002794.1 + 128160 0.66 0.722081
Target:  5'- aCGGCGGCucgcgccgcggacGGGUcggugaCCUCG-UCGGuCGCGa -3'
miRNA:   3'- -GCCGCCG-------------UCCG------GGAGCaAGCC-GUGCa -5'
11083 5' -62.3 NC_002794.1 + 152604 0.66 0.713668
Target:  5'- gCGGC-GCGGGCCCaag--CGGCGCa- -3'
miRNA:   3'- -GCCGcCGUCCGGGagcaaGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 36958 0.66 0.713668
Target:  5'- gCGGCGGCAGGCagUCGcgcaggaggaUCGcGCGCa- -3'
miRNA:   3'- -GCCGCCGUCCGggAGCa---------AGC-CGUGca -5'
11083 5' -62.3 NC_002794.1 + 92266 0.66 0.713668
Target:  5'- uGGCGGCGGcGCCgggCGa--GGCGCGc -3'
miRNA:   3'- gCCGCCGUC-CGGga-GCaagCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 91738 0.66 0.713668
Target:  5'- uCGGCGGCcaacaAGGUgCCggCGggCGGCACc- -3'
miRNA:   3'- -GCCGCCG-----UCCG-GGa-GCaaGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 18808 0.66 0.713668
Target:  5'- cCGGCcaacgGGUcGGCgaCCUCGgcCGGCGCGg -3'
miRNA:   3'- -GCCG-----CCGuCCG--GGAGCaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 147985 0.66 0.704263
Target:  5'- uGGCGGUgucccugcuGGCCUUCGUccgcgUCGGCcuCGg -3'
miRNA:   3'- gCCGCCGu--------CCGGGAGCA-----AGCCGu-GCa -5'
11083 5' -62.3 NC_002794.1 + 82050 0.66 0.704263
Target:  5'- gCGGCGGCGGcGgCgUCGUccUCGGCcuCGc -3'
miRNA:   3'- -GCCGCCGUC-CgGgAGCA--AGCCGu-GCa -5'
11083 5' -62.3 NC_002794.1 + 51062 0.66 0.704263
Target:  5'- aCGGCGGCGacGGCgaCCUCcgagcgUGGCGCGc -3'
miRNA:   3'- -GCCGCCGU--CCG--GGAGcaa---GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 184051 0.66 0.704263
Target:  5'- gCGGUcGCGGGCCgCggCGaagCGGCACGc -3'
miRNA:   3'- -GCCGcCGUCCGG-Ga-GCaa-GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 105445 0.66 0.704263
Target:  5'- cCGGCGGC--GCCgUCGUUCuGCcCGUu -3'
miRNA:   3'- -GCCGCCGucCGGgAGCAAGcCGuGCA- -5'
11083 5' -62.3 NC_002794.1 + 112355 0.66 0.704263
Target:  5'- cCGGCGGCGGGgCggggagcugCUgGaacUCGGCACGc -3'
miRNA:   3'- -GCCGCCGUCCgG---------GAgCa--AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 110445 0.66 0.704263
Target:  5'- uCGGUGGCggAGGCCggcgagccggCUCG-UCGGCuCGg -3'
miRNA:   3'- -GCCGCCG--UCCGG----------GAGCaAGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 134175 0.66 0.694804
Target:  5'- cCGcGCGGauGGCcaCCUCGUaUCGGCugGUg -3'
miRNA:   3'- -GC-CGCCguCCG--GGAGCA-AGCCGugCA- -5'
11083 5' -62.3 NC_002794.1 + 48886 0.66 0.694804
Target:  5'- aGGUGGCAGGCCagCGUugccgcagcUCGGgGCc- -3'
miRNA:   3'- gCCGCCGUCCGGgaGCA---------AGCCgUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.