miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 63477 0.66 0.723012
Target:  5'- aGGCGGCGGccGCCgUCGacgacgccgCGGCGuCGUc -3'
miRNA:   3'- gCCGCCGUC--CGGgAGCaa-------GCCGU-GCA- -5'
11083 5' -62.3 NC_002794.1 + 128160 0.66 0.722081
Target:  5'- aCGGCGGCucgcgccgcggacGGGUcggugaCCUCG-UCGGuCGCGa -3'
miRNA:   3'- -GCCGCCG-------------UCCG------GGAGCaAGCC-GUGCa -5'
11083 5' -62.3 NC_002794.1 + 18808 0.66 0.713668
Target:  5'- cCGGCcaacgGGUcGGCgaCCUCGgcCGGCGCGg -3'
miRNA:   3'- -GCCG-----CCGuCCG--GGAGCaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 91738 0.66 0.713668
Target:  5'- uCGGCGGCcaacaAGGUgCCggCGggCGGCACc- -3'
miRNA:   3'- -GCCGCCG-----UCCG-GGa-GCaaGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 105445 0.66 0.704263
Target:  5'- cCGGCGGC--GCCgUCGUUCuGCcCGUu -3'
miRNA:   3'- -GCCGCCGucCGGgAGCAAGcCGuGCA- -5'
11083 5' -62.3 NC_002794.1 + 112355 0.66 0.704263
Target:  5'- cCGGCGGCGGGgCggggagcugCUgGaacUCGGCACGc -3'
miRNA:   3'- -GCCGCCGUCCgG---------GAgCa--AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 110445 0.66 0.704263
Target:  5'- uCGGUGGCggAGGCCggcgagccggCUCG-UCGGCuCGg -3'
miRNA:   3'- -GCCGCCG--UCCGG----------GAGCaAGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 152604 0.66 0.713668
Target:  5'- gCGGC-GCGGGCCCaag--CGGCGCa- -3'
miRNA:   3'- -GCCGcCGUCCGGGagcaaGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 36958 0.66 0.713668
Target:  5'- gCGGCGGCAGGCagUCGcgcaggaggaUCGcGCGCa- -3'
miRNA:   3'- -GCCGCCGUCCGggAGCa---------AGC-CGUGca -5'
11083 5' -62.3 NC_002794.1 + 92266 0.66 0.713668
Target:  5'- uGGCGGCGGcGCCgggCGa--GGCGCGc -3'
miRNA:   3'- gCCGCCGUC-CGGga-GCaagCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 8122 0.67 0.646959
Target:  5'- gGGCGGCGGcCuCCUCGgugacCGGCgACGg -3'
miRNA:   3'- gCCGCCGUCcG-GGAGCaa---GCCG-UGCa -5'
11083 5' -62.3 NC_002794.1 + 41821 0.67 0.646959
Target:  5'- aGGCGcccaGCAGGCCCgUGgUCGGguCGa -3'
miRNA:   3'- gCCGC----CGUCCGGGaGCaAGCCguGCa -5'
11083 5' -62.3 NC_002794.1 + 113874 0.67 0.646959
Target:  5'- aGGCGcGCucGGCCgCggcgCGcgUCGGCGCGg -3'
miRNA:   3'- gCCGC-CGu-CCGG-Ga---GCa-AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 112296 0.67 0.646959
Target:  5'- gGGCGGCcccccGGGUCCgacUUCGGCGCc- -3'
miRNA:   3'- gCCGCCG-----UCCGGGagcAAGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 53769 0.67 0.646959
Target:  5'- cCGGCGGCGGgacGCCCgcgacgCGccCGGCGgGUu -3'
miRNA:   3'- -GCCGCCGUC---CGGGa-----GCaaGCCGUgCA- -5'
11083 5' -62.3 NC_002794.1 + 98975 0.67 0.646959
Target:  5'- uCGGCGGCGccguGG-CCUCGguggUCGGCGgcuuCGUc -3'
miRNA:   3'- -GCCGCCGU----CCgGGAGCa---AGCCGU----GCA- -5'
11083 5' -62.3 NC_002794.1 + 145394 0.67 0.646959
Target:  5'- uCGGUGGCGcgccgcgcGGCCUUaaaGcgCGGCGCGc -3'
miRNA:   3'- -GCCGCCGU--------CCGGGAg--CaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 179210 0.67 0.666177
Target:  5'- cCGGCGGCAcgacggacguGGCCCagaugcaacaggUCGgcgUCGGCGa-- -3'
miRNA:   3'- -GCCGCCGU----------CCGGG------------AGCa--AGCCGUgca -5'
11083 5' -62.3 NC_002794.1 + 154038 0.67 0.663299
Target:  5'- gCGGCGGUugccguguaugcagGGGCgCCU-GUgcaucaUCGGCACGa -3'
miRNA:   3'- -GCCGCCG--------------UCCG-GGAgCA------AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 120839 0.67 0.637331
Target:  5'- aCGGgGGCuaucccugcgcGGCCgUCGUccagcgccUCGGCugGUg -3'
miRNA:   3'- -GCCgCCGu----------CCGGgAGCA--------AGCCGugCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.