miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 41821 0.67 0.646959
Target:  5'- aGGCGcccaGCAGGCCCgUGgUCGGguCGa -3'
miRNA:   3'- gCCGC----CGUCCGGGaGCaAGCCguGCa -5'
11083 5' -62.3 NC_002794.1 + 122665 0.67 0.656577
Target:  5'- uGGCGGCgcAGGCCCggcUGUgcCGGuCGCGc -3'
miRNA:   3'- gCCGCCG--UCCGGGa--GCAa-GCC-GUGCa -5'
11083 5' -62.3 NC_002794.1 + 154038 0.67 0.663299
Target:  5'- gCGGCGGUugccguguaugcagGGGCgCCU-GUgcaucaUCGGCACGa -3'
miRNA:   3'- -GCCGCCG--------------UCCG-GGAgCA------AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 179210 0.67 0.666177
Target:  5'- cCGGCGGCAcgacggacguGGCCCagaugcaacaggUCGgcgUCGGCGa-- -3'
miRNA:   3'- -GCCGCCGU----------CCGGG------------AGCa--AGCCGUgca -5'
11083 5' -62.3 NC_002794.1 + 145394 0.67 0.646959
Target:  5'- uCGGUGGCGcgccgcgcGGCCUUaaaGcgCGGCGCGc -3'
miRNA:   3'- -GCCGCCGU--------CCGGGAg--CaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 98975 0.67 0.646959
Target:  5'- uCGGCGGCGccguGG-CCUCGguggUCGGCGgcuuCGUc -3'
miRNA:   3'- -GCCGCCGU----CCgGGAGCa---AGCCGU----GCA- -5'
11083 5' -62.3 NC_002794.1 + 53769 0.67 0.646959
Target:  5'- cCGGCGGCGGgacGCCCgcgacgCGccCGGCGgGUu -3'
miRNA:   3'- -GCCGCCGUC---CGGGa-----GCaaGCCGUgCA- -5'
11083 5' -62.3 NC_002794.1 + 112296 0.67 0.646959
Target:  5'- gGGCGGCcccccGGGUCCgacUUCGGCGCc- -3'
miRNA:   3'- gCCGCCG-----UCCGGGagcAAGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 113874 0.67 0.646959
Target:  5'- aGGCGcGCucGGCCgCggcgCGcgUCGGCGCGg -3'
miRNA:   3'- gCCGC-CGu-CCGG-Ga---GCa-AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 63323 0.68 0.589264
Target:  5'- cCGGCGGgGGGCCCgagcgCGgacCGGuCGCu- -3'
miRNA:   3'- -GCCGCCgUCCGGGa----GCaa-GCC-GUGca -5'
11083 5' -62.3 NC_002794.1 + 44507 0.68 0.588307
Target:  5'- aCGGCGGCccagaccGGGCCCgUGUccgCGaGCGCGc -3'
miRNA:   3'- -GCCGCCG-------UCCGGGaGCAa--GC-CGUGCa -5'
11083 5' -62.3 NC_002794.1 + 70873 0.68 0.589264
Target:  5'- gCGGCGGCAgcggcGGCuCCUCGagCGccaggucggugaGCACGUc -3'
miRNA:   3'- -GCCGCCGU-----CCG-GGAGCaaGC------------CGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 118691 0.68 0.586395
Target:  5'- cCGGCGGCAGcGCCCagGagCGcaugauggccagcuGCGCGUa -3'
miRNA:   3'- -GCCGCCGUC-CGGGagCaaGC--------------CGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 80442 0.68 0.598846
Target:  5'- cCGGCGGCcgccGGCCCgUCGg-CGGCcCGc -3'
miRNA:   3'- -GCCGCCGu---CCGGG-AGCaaGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 117200 0.68 0.589264
Target:  5'- uCGGCGuCGGGCCCgggCGgcucCGGcCGCGUc -3'
miRNA:   3'- -GCCGCcGUCCGGGa--GCaa--GCC-GUGCA- -5'
11083 5' -62.3 NC_002794.1 + 120996 0.68 0.598846
Target:  5'- gCGGCGGCGGGCCauggcCGagggUCGGC-Cu- -3'
miRNA:   3'- -GCCGCCGUCCGGga---GCa---AGCCGuGca -5'
11083 5' -62.3 NC_002794.1 + 102154 0.68 0.598846
Target:  5'- uCGGCGGCgugcgcgccgGGGCCaUCGU--GGCGCGc -3'
miRNA:   3'- -GCCGCCG----------UCCGGgAGCAagCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 186284 0.68 0.598846
Target:  5'- gCGGCGGCAccgcggccaggcGGCCggUCGccgCGGCGCGc -3'
miRNA:   3'- -GCCGCCGU------------CCGGg-AGCaa-GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 184580 0.68 0.598846
Target:  5'- gCGGCGGCGgcGGCCa-CGcgCGGcCGCGg -3'
miRNA:   3'- -GCCGCCGU--CCGGgaGCaaGCC-GUGCa -5'
11083 5' -62.3 NC_002794.1 + 123013 0.68 0.586395
Target:  5'- gGGcCGGCuGGCCgUCGUguuccccgacaacgUCGGCGUGUa -3'
miRNA:   3'- gCC-GCCGuCCGGgAGCA--------------AGCCGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.