miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 184506 0.79 0.126349
Target:  5'- gGGCGGCgcGGGCCCcgCGcgCGGCGCGg -3'
miRNA:   3'- gCCGCCG--UCCGGGa-GCaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 140525 0.78 0.152315
Target:  5'- uGGCGGCAGGCCCUCGggCaacaaaucgccgagGGaCGCGa -3'
miRNA:   3'- gCCGCCGUCCGGGAGCaaG--------------CC-GUGCa -5'
11083 5' -62.3 NC_002794.1 + 182964 0.78 0.153419
Target:  5'- aCGGCGGCcGGCuCCUCGUUCGaGCcgACGg -3'
miRNA:   3'- -GCCGCCGuCCG-GGAGCAAGC-CG--UGCa -5'
11083 5' -62.3 NC_002794.1 + 127362 0.78 0.157151
Target:  5'- gCGGCGGCGcGGCCgCUCGUgUCGGCggACGg -3'
miRNA:   3'- -GCCGCCGU-CCGG-GAGCA-AGCCG--UGCa -5'
11083 5' -62.3 NC_002794.1 + 92321 0.75 0.239593
Target:  5'- gGGCGGCggGGGCCCgggCGggCGGCucgGCGUc -3'
miRNA:   3'- gCCGCCG--UCCGGGa--GCaaGCCG---UGCA- -5'
11083 5' -62.3 NC_002794.1 + 121316 0.75 0.245098
Target:  5'- uCGGCGGUuGGCCCUCGa--GGCGCc- -3'
miRNA:   3'- -GCCGCCGuCCGGGAGCaagCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 55190 0.74 0.268173
Target:  5'- aGGCGGC-GGCCCUaacacCGGCGCGg -3'
miRNA:   3'- gCCGCCGuCCGGGAgcaa-GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 101494 0.74 0.280355
Target:  5'- cCGGCGGCcGGUCCgagCGgugCGGCACa- -3'
miRNA:   3'- -GCCGCCGuCCGGGa--GCaa-GCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 113676 0.73 0.299444
Target:  5'- gCGGCGaGCAGGCCCgccacCG-UCGGCAgCGc -3'
miRNA:   3'- -GCCGC-CGUCCGGGa----GCaAGCCGU-GCa -5'
11083 5' -62.3 NC_002794.1 + 108453 0.73 0.31272
Target:  5'- gCGGCGGC-GGCCCgc---CGGCACGg -3'
miRNA:   3'- -GCCGCCGuCCGGGagcaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 23724 0.73 0.319524
Target:  5'- gCGcGCGGCGGGCCCgaCGUaccuuccgaUCGaGCACGg -3'
miRNA:   3'- -GC-CGCCGUCCGGGa-GCA---------AGC-CGUGCa -5'
11083 5' -62.3 NC_002794.1 + 132910 0.73 0.333462
Target:  5'- gCGGCGGCcGGUCaCUCGUUccCGGUugGa -3'
miRNA:   3'- -GCCGCCGuCCGG-GAGCAA--GCCGugCa -5'
11083 5' -62.3 NC_002794.1 + 139903 0.73 0.333462
Target:  5'- gGGCcagccGCAGGCCgUCGgaCGGCACGc -3'
miRNA:   3'- gCCGc----CGUCCGGgAGCaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 14496 0.72 0.355195
Target:  5'- gCGGCGGC-GGCCCgCGcucgCGGCGCu- -3'
miRNA:   3'- -GCCGCCGuCCGGGaGCaa--GCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 49419 0.72 0.362658
Target:  5'- gCGGCGGCGGcGgCCgucacggCGUcCGGCGCGg -3'
miRNA:   3'- -GCCGCCGUC-CgGGa------GCAaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 107058 0.72 0.377907
Target:  5'- aGGCGGCGGGCgCggCGccgcCGGCAUGUc -3'
miRNA:   3'- gCCGCCGUCCGgGa-GCaa--GCCGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 117492 0.71 0.393581
Target:  5'- uGGCGuGCAGGUCCUCGaUCaGGUGCu- -3'
miRNA:   3'- gCCGC-CGUCCGGGAGCaAG-CCGUGca -5'
11083 5' -62.3 NC_002794.1 + 87361 0.71 0.393581
Target:  5'- cCGGCGGCGagcGGCgUUCuGggCGGCGCGg -3'
miRNA:   3'- -GCCGCCGU---CCGgGAG-CaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 21933 0.71 0.393581
Target:  5'- gCGGCGGCGcGGCgCUCGUcgaaggccgUCGGC-CGc -3'
miRNA:   3'- -GCCGCCGU-CCGgGAGCA---------AGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 191681 0.71 0.401575
Target:  5'- gCGGCGGCGGcguGCCCUCGUcgCGGacCACc- -3'
miRNA:   3'- -GCCGCCGUC---CGGGAGCAa-GCC--GUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.