miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 115730 0.71 0.409671
Target:  5'- gGGCGGUcgggGGGCCCUgGaUCaGGUACGg -3'
miRNA:   3'- gCCGCCG----UCCGGGAgCaAG-CCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 50770 0.71 0.409671
Target:  5'- gCGGCGGCGacGGCgcgUCUCGggCGGCGCc- -3'
miRNA:   3'- -GCCGCCGU--CCG---GGAGCaaGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 106447 0.71 0.409671
Target:  5'- aGGCGGUgcAGGCggaCCUCGUcgccgugacUCGGCGCa- -3'
miRNA:   3'- gCCGCCG--UCCG---GGAGCA---------AGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 37758 0.71 0.434557
Target:  5'- gCGGCGGCGccggcgggagcGGCCgUCGUcgUCGGC-CGc -3'
miRNA:   3'- -GCCGCCGU-----------CCGGgAGCA--AGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 145590 0.7 0.443045
Target:  5'- gCGGCGGCcGGCUCccgCGgagUCGgGCGCGa -3'
miRNA:   3'- -GCCGCCGuCCGGGa--GCa--AGC-CGUGCa -5'
11083 5' -62.3 NC_002794.1 + 38436 0.7 0.451626
Target:  5'- uGGCGGCGGGCCggacugaGgagcCGGCGCGg -3'
miRNA:   3'- gCCGCCGUCCGGgag----Caa--GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 116907 0.7 0.451626
Target:  5'- cCGGCGGCcGGUCCggCG-UCGGCuccgGCGUc -3'
miRNA:   3'- -GCCGCCGuCCGGGa-GCaAGCCG----UGCA- -5'
11083 5' -62.3 NC_002794.1 + 92506 0.7 0.460297
Target:  5'- aGGCGGCcauGGCCCUgGUguccgaGGUGCGc -3'
miRNA:   3'- gCCGCCGu--CCGGGAgCAag----CCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 108316 0.7 0.469055
Target:  5'- cCGGCGGUGGGUCUUgGacggCGGCGCa- -3'
miRNA:   3'- -GCCGCCGUCCGGGAgCaa--GCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 191000 0.7 0.469055
Target:  5'- aCGGCGucGCGaucGGCCgUUCGaUCGGCACGUu -3'
miRNA:   3'- -GCCGC--CGU---CCGG-GAGCaAGCCGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 94031 0.7 0.486822
Target:  5'- cCGcCGGCGGGCCCgagagCGgcggCGGUGCGg -3'
miRNA:   3'- -GCcGCCGUCCGGGa----GCaa--GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 48231 0.69 0.495825
Target:  5'- aGGCGGCc-GCCaUCGUUCGGC-CGc -3'
miRNA:   3'- gCCGCCGucCGGgAGCAAGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 40551 0.69 0.504902
Target:  5'- cCGGCGGCAuGaGCuUCUCGUUCGcGC-CGUc -3'
miRNA:   3'- -GCCGCCGU-C-CG-GGAGCAAGC-CGuGCA- -5'
11083 5' -62.3 NC_002794.1 + 151881 0.69 0.504902
Target:  5'- -cGUGGaaguGGCCCUCGaUUCGGCGCc- -3'
miRNA:   3'- gcCGCCgu--CCGGGAGC-AAGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 131530 0.69 0.504902
Target:  5'- uCGGCGcCGGGCCCgucaucacggccUCGcccguggUCGGCGCGg -3'
miRNA:   3'- -GCCGCcGUCCGGG------------AGCa------AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 90571 0.69 0.51405
Target:  5'- cCGGCGGCGGGUCC-CG---GGCGCu- -3'
miRNA:   3'- -GCCGCCGUCCGGGaGCaagCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 72450 0.69 0.523264
Target:  5'- cCGGCGGCGccccgcgcccGGCCC-CGcggCGGCGCc- -3'
miRNA:   3'- -GCCGCCGU----------CCGGGaGCaa-GCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 64820 0.69 0.523264
Target:  5'- aCGGCGGCGagccGGCgCCgacgacCGgaCGGCGCGg -3'
miRNA:   3'- -GCCGCCGU----CCG-GGa-----GCaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 49020 0.69 0.532542
Target:  5'- gCGGCGGCcGcGgCgUCGUcCGGCGCGg -3'
miRNA:   3'- -GCCGCCGuC-CgGgAGCAaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 54839 0.69 0.532542
Target:  5'- uCGGCGGCAcccaacGCCCguaGgcCGGCGCGg -3'
miRNA:   3'- -GCCGCCGUc-----CGGGag-CaaGCCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.