miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 119512 0.69 0.539071
Target:  5'- uCGGCGGCGcGGagccggccgcggacCCCUCGUccgCGGC-CGUc -3'
miRNA:   3'- -GCCGCCGU-CC--------------GGGAGCAa--GCCGuGCA- -5'
11083 5' -62.3 NC_002794.1 + 119719 0.69 0.541878
Target:  5'- aCGGCGGCuucGGCaCCgggCGcUCGGCGUGUu -3'
miRNA:   3'- -GCCGCCGu--CCG-GGa--GCaAGCCGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 570 0.69 0.541878
Target:  5'- gCGGUGGCAGG-UCUCGUuuacccUCGGUcCGUu -3'
miRNA:   3'- -GCCGCCGUCCgGGAGCA------AGCCGuGCA- -5'
11083 5' -62.3 NC_002794.1 + 34083 0.69 0.551268
Target:  5'- cCGGCGGcCGGGCagCCgUCGggCGGCcCGg -3'
miRNA:   3'- -GCCGCC-GUCCG--GG-AGCaaGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 26652 0.69 0.551268
Target:  5'- aCGGCGGCcGGCUCg---UCGGCGgGg -3'
miRNA:   3'- -GCCGCCGuCCGGGagcaAGCCGUgCa -5'
11083 5' -62.3 NC_002794.1 + 53902 0.69 0.551268
Target:  5'- cCGGCGGC--GUCCUCGUcgccgUCGGCGgCGc -3'
miRNA:   3'- -GCCGCCGucCGGGAGCA-----AGCCGU-GCa -5'
11083 5' -62.3 NC_002794.1 + 176608 0.68 0.560706
Target:  5'- gCGGcCGGCAcGGCCauccucguggCGUUCGGCcCGg -3'
miRNA:   3'- -GCC-GCCGU-CCGGga--------GCAAGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 108405 0.68 0.560706
Target:  5'- cCGGCGGCGGcGCCCacca-CGGCGCc- -3'
miRNA:   3'- -GCCGCCGUC-CGGGagcaaGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 151583 0.68 0.564494
Target:  5'- cCGGCGGCgcgcgccgccgccgcGGGCCCgCGguuccUCGGCugACGg -3'
miRNA:   3'- -GCCGCCG---------------UCCGGGaGCa----AGCCG--UGCa -5'
11083 5' -62.3 NC_002794.1 + 111093 0.68 0.570189
Target:  5'- gGGuCGGCGGGCCCggCGggaccgUGGC-CGUc -3'
miRNA:   3'- gCC-GCCGUCCGGGa-GCaa----GCCGuGCA- -5'
11083 5' -62.3 NC_002794.1 + 106357 0.68 0.57971
Target:  5'- aCGGCgGGCGGGCgCCg-GUUC-GCGCGg -3'
miRNA:   3'- -GCCG-CCGUCCG-GGagCAAGcCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 67959 0.68 0.57971
Target:  5'- aGGaCGGCGGGCCCagaCGggUCGGuCGCu- -3'
miRNA:   3'- gCC-GCCGUCCGGGa--GCa-AGCC-GUGca -5'
11083 5' -62.3 NC_002794.1 + 123013 0.68 0.586395
Target:  5'- gGGcCGGCuGGCCgUCGUguuccccgacaacgUCGGCGUGUa -3'
miRNA:   3'- gCC-GCCGuCCGGgAGCA--------------AGCCGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 118691 0.68 0.586395
Target:  5'- cCGGCGGCAGcGCCCagGagCGcaugauggccagcuGCGCGUa -3'
miRNA:   3'- -GCCGCCGUC-CGGGagCaaGC--------------CGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 44507 0.68 0.588307
Target:  5'- aCGGCGGCccagaccGGGCCCgUGUccgCGaGCGCGc -3'
miRNA:   3'- -GCCGCCG-------UCCGGGaGCAa--GC-CGUGCa -5'
11083 5' -62.3 NC_002794.1 + 117200 0.68 0.589264
Target:  5'- uCGGCGuCGGGCCCgggCGgcucCGGcCGCGUc -3'
miRNA:   3'- -GCCGCcGUCCGGGa--GCaa--GCC-GUGCA- -5'
11083 5' -62.3 NC_002794.1 + 70873 0.68 0.589264
Target:  5'- gCGGCGGCAgcggcGGCuCCUCGagCGccaggucggugaGCACGUc -3'
miRNA:   3'- -GCCGCCGU-----CCG-GGAGCaaGC------------CGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 63323 0.68 0.589264
Target:  5'- cCGGCGGgGGGCCCgagcgCGgacCGGuCGCu- -3'
miRNA:   3'- -GCCGCCgUCCGGGa----GCaa-GCC-GUGca -5'
11083 5' -62.3 NC_002794.1 + 80442 0.68 0.598846
Target:  5'- cCGGCGGCcgccGGCCCgUCGg-CGGCcCGc -3'
miRNA:   3'- -GCCGCCGu---CCGGG-AGCaaGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 102154 0.68 0.598846
Target:  5'- uCGGCGGCgugcgcgccgGGGCCaUCGU--GGCGCGc -3'
miRNA:   3'- -GCCGCCG----------UCCGGgAGCAagCCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.