miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 48886 0.66 0.694804
Target:  5'- aGGUGGCAGGCCagCGUugccgcagcUCGGgGCc- -3'
miRNA:   3'- gCCGCCGUCCGGgaGCA---------AGCCgUGca -5'
11083 5' -62.3 NC_002794.1 + 134175 0.66 0.694804
Target:  5'- cCGcGCGGauGGCcaCCUCGUaUCGGCugGUg -3'
miRNA:   3'- -GC-CGCCguCCG--GGAGCA-AGCCGugCA- -5'
11083 5' -62.3 NC_002794.1 + 94064 0.66 0.694804
Target:  5'- gGGCGGCggggggcgaGGGCaCCUaCGaccugUCGGCGCu- -3'
miRNA:   3'- gCCGCCG---------UCCG-GGA-GCa----AGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 154381 0.66 0.685298
Target:  5'- gCGGCGGCGGGCacgCC-CGUUCgcguGGUGCc- -3'
miRNA:   3'- -GCCGCCGUCCG---GGaGCAAG----CCGUGca -5'
11083 5' -62.3 NC_002794.1 + 138444 0.66 0.685298
Target:  5'- uGGCGGC-GGCgCCUCGgcCuGCgACGUg -3'
miRNA:   3'- gCCGCCGuCCG-GGAGCaaGcCG-UGCA- -5'
11083 5' -62.3 NC_002794.1 + 51367 0.66 0.685298
Target:  5'- aGGCGGCc-GCCC-CGUcCGGC-CGg -3'
miRNA:   3'- gCCGCCGucCGGGaGCAaGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 145330 0.66 0.685298
Target:  5'- gGGCGGCgcucGGGCCCgagCGggccCGaGCugGg -3'
miRNA:   3'- gCCGCCG----UCCGGGa--GCaa--GC-CGugCa -5'
11083 5' -62.3 NC_002794.1 + 44555 0.66 0.675754
Target:  5'- cCGGCGGCGGcGCCCguugaCGUcacgCGGgACc- -3'
miRNA:   3'- -GCCGCCGUC-CGGGa----GCAa---GCCgUGca -5'
11083 5' -62.3 NC_002794.1 + 100455 0.66 0.675754
Target:  5'- gCGGCGGCGGcGCCUUCc--CGGUgGCGg -3'
miRNA:   3'- -GCCGCCGUC-CGGGAGcaaGCCG-UGCa -5'
11083 5' -62.3 NC_002794.1 + 58526 0.66 0.675754
Target:  5'- gGGCacGCcgAGGCCUUCGccgCGGCGCGc -3'
miRNA:   3'- gCCGc-CG--UCCGGGAGCaa-GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 179210 0.67 0.666177
Target:  5'- cCGGCGGCAcgacggacguGGCCCagaugcaacaggUCGgcgUCGGCGa-- -3'
miRNA:   3'- -GCCGCCGU----------CCGGG------------AGCa--AGCCGUgca -5'
11083 5' -62.3 NC_002794.1 + 154038 0.67 0.663299
Target:  5'- gCGGCGGUugccguguaugcagGGGCgCCU-GUgcaucaUCGGCACGa -3'
miRNA:   3'- -GCCGCCG--------------UCCG-GGAgCA------AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 122665 0.67 0.656577
Target:  5'- uGGCGGCgcAGGCCCggcUGUgcCGGuCGCGc -3'
miRNA:   3'- gCCGCCG--UCCGGGa--GCAa-GCC-GUGCa -5'
11083 5' -62.3 NC_002794.1 + 145394 0.67 0.646959
Target:  5'- uCGGUGGCGcgccgcgcGGCCUUaaaGcgCGGCGCGc -3'
miRNA:   3'- -GCCGCCGU--------CCGGGAg--CaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 98975 0.67 0.646959
Target:  5'- uCGGCGGCGccguGG-CCUCGguggUCGGCGgcuuCGUc -3'
miRNA:   3'- -GCCGCCGU----CCgGGAGCa---AGCCGU----GCA- -5'
11083 5' -62.3 NC_002794.1 + 53769 0.67 0.646959
Target:  5'- cCGGCGGCGGgacGCCCgcgacgCGccCGGCGgGUu -3'
miRNA:   3'- -GCCGCCGUC---CGGGa-----GCaaGCCGUgCA- -5'
11083 5' -62.3 NC_002794.1 + 112296 0.67 0.646959
Target:  5'- gGGCGGCcccccGGGUCCgacUUCGGCGCc- -3'
miRNA:   3'- gCCGCCG-----UCCGGGagcAAGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 113874 0.67 0.646959
Target:  5'- aGGCGcGCucGGCCgCggcgCGcgUCGGCGCGg -3'
miRNA:   3'- gCCGC-CGu-CCGG-Ga---GCa-AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 41821 0.67 0.646959
Target:  5'- aGGCGcccaGCAGGCCCgUGgUCGGguCGa -3'
miRNA:   3'- gCCGC----CGUCCGGGaGCaAGCCguGCa -5'
11083 5' -62.3 NC_002794.1 + 8122 0.67 0.646959
Target:  5'- gGGCGGCGGcCuCCUCGgugacCGGCgACGg -3'
miRNA:   3'- gCCGCCGUCcG-GGAGCaa---GCCG-UGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.