Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 72377 | 0.67 | 0.645996 |
Target: 5'- -cGCGGCcccGGCCgUCGUcuugaacUCGaGCACGUa -3' miRNA: 3'- gcCGCCGu--CCGGgAGCA-------AGC-CGUGCA- -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 141429 | 0.67 | 0.637331 |
Target: 5'- gGGCGGCggGGGCgCCgggggcgcCGggagCGGCGCGg -3' miRNA: 3'- gCCGCCG--UCCG-GGa-------GCaa--GCCGUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 120839 | 0.67 | 0.637331 |
Target: 5'- aCGGgGGCuaucccugcgcGGCCgUCGUccagcgccUCGGCugGUg -3' miRNA: 3'- -GCCgCCGu----------CCGGgAGCA--------AGCCGugCA- -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 114620 | 0.67 | 0.627699 |
Target: 5'- uGGCGcaGCAGGUCC----UCGGCGCGg -3' miRNA: 3'- gCCGC--CGUCCGGGagcaAGCCGUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 79434 | 0.67 | 0.627699 |
Target: 5'- cCGGCGGCGGcGgCggCGacCGGCGCGg -3' miRNA: 3'- -GCCGCCGUC-CgGgaGCaaGCCGUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 119131 | 0.67 | 0.627699 |
Target: 5'- aGGCcuGGCAGGCgUUCGggUGGuCGCGc -3' miRNA: 3'- gCCG--CCGUCCGgGAGCaaGCC-GUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 57406 | 0.67 | 0.61807 |
Target: 5'- cCGGCGcccGCGuGGCCggCGUgcuggUCGGCACGg -3' miRNA: 3'- -GCCGC---CGU-CCGGgaGCA-----AGCCGUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 123794 | 0.67 | 0.61807 |
Target: 5'- aGGCGGUGGcGCCgUUCGgg-GGCGCGg -3' miRNA: 3'- gCCGCCGUC-CGG-GAGCaagCCGUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 83873 | 0.67 | 0.61807 |
Target: 5'- cCGGuCGGCGcgacGGCCC-CGggcUCGGCGCc- -3' miRNA: 3'- -GCC-GCCGU----CCGGGaGCa--AGCCGUGca -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 52656 | 0.68 | 0.60845 |
Target: 5'- gCGGCGGCAGGCUCUgCGccaccgagaGGgACGc -3' miRNA: 3'- -GCCGCCGUCCGGGA-GCaag------CCgUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 184580 | 0.68 | 0.598846 |
Target: 5'- gCGGCGGCGgcGGCCa-CGcgCGGcCGCGg -3' miRNA: 3'- -GCCGCCGU--CCGGgaGCaaGCC-GUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 186284 | 0.68 | 0.598846 |
Target: 5'- gCGGCGGCAccgcggccaggcGGCCggUCGccgCGGCGCGc -3' miRNA: 3'- -GCCGCCGU------------CCGGg-AGCaa-GCCGUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 102154 | 0.68 | 0.598846 |
Target: 5'- uCGGCGGCgugcgcgccgGGGCCaUCGU--GGCGCGc -3' miRNA: 3'- -GCCGCCG----------UCCGGgAGCAagCCGUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 120996 | 0.68 | 0.598846 |
Target: 5'- gCGGCGGCGGGCCauggcCGagggUCGGC-Cu- -3' miRNA: 3'- -GCCGCCGUCCGGga---GCa---AGCCGuGca -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 80442 | 0.68 | 0.598846 |
Target: 5'- cCGGCGGCcgccGGCCCgUCGg-CGGCcCGc -3' miRNA: 3'- -GCCGCCGu---CCGGG-AGCaaGCCGuGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 70873 | 0.68 | 0.589264 |
Target: 5'- gCGGCGGCAgcggcGGCuCCUCGagCGccaggucggugaGCACGUc -3' miRNA: 3'- -GCCGCCGU-----CCG-GGAGCaaGC------------CGUGCA- -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 63323 | 0.68 | 0.589264 |
Target: 5'- cCGGCGGgGGGCCCgagcgCGgacCGGuCGCu- -3' miRNA: 3'- -GCCGCCgUCCGGGa----GCaa-GCC-GUGca -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 117200 | 0.68 | 0.589264 |
Target: 5'- uCGGCGuCGGGCCCgggCGgcucCGGcCGCGUc -3' miRNA: 3'- -GCCGCcGUCCGGGa--GCaa--GCC-GUGCA- -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 44507 | 0.68 | 0.588307 |
Target: 5'- aCGGCGGCccagaccGGGCCCgUGUccgCGaGCGCGc -3' miRNA: 3'- -GCCGCCG-------UCCGGGaGCAa--GC-CGUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 123013 | 0.68 | 0.586395 |
Target: 5'- gGGcCGGCuGGCCgUCGUguuccccgacaacgUCGGCGUGUa -3' miRNA: 3'- gCC-GCCGuCCGGgAGCA--------------AGCCGUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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