Results 61 - 80 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 123013 | 0.68 | 0.586395 |
Target: 5'- gGGcCGGCuGGCCgUCGUguuccccgacaacgUCGGCGUGUa -3' miRNA: 3'- gCC-GCCGuCCGGgAGCA--------------AGCCGUGCA- -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 67959 | 0.68 | 0.57971 |
Target: 5'- aGGaCGGCGGGCCCagaCGggUCGGuCGCu- -3' miRNA: 3'- gCC-GCCGUCCGGGa--GCa-AGCC-GUGca -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 106357 | 0.68 | 0.57971 |
Target: 5'- aCGGCgGGCGGGCgCCg-GUUC-GCGCGg -3' miRNA: 3'- -GCCG-CCGUCCG-GGagCAAGcCGUGCa -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 111093 | 0.68 | 0.570189 |
Target: 5'- gGGuCGGCGGGCCCggCGggaccgUGGC-CGUc -3' miRNA: 3'- gCC-GCCGUCCGGGa-GCaa----GCCGuGCA- -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 151583 | 0.68 | 0.564494 |
Target: 5'- cCGGCGGCgcgcgccgccgccgcGGGCCCgCGguuccUCGGCugACGg -3' miRNA: 3'- -GCCGCCG---------------UCCGGGaGCa----AGCCG--UGCa -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 176608 | 0.68 | 0.560706 |
Target: 5'- gCGGcCGGCAcGGCCauccucguggCGUUCGGCcCGg -3' miRNA: 3'- -GCC-GCCGU-CCGGga--------GCAAGCCGuGCa -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 108405 | 0.68 | 0.560706 |
Target: 5'- cCGGCGGCGGcGCCCacca-CGGCGCc- -3' miRNA: 3'- -GCCGCCGUC-CGGGagcaaGCCGUGca -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 34083 | 0.69 | 0.551268 |
Target: 5'- cCGGCGGcCGGGCagCCgUCGggCGGCcCGg -3' miRNA: 3'- -GCCGCC-GUCCG--GG-AGCaaGCCGuGCa -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 53902 | 0.69 | 0.551268 |
Target: 5'- cCGGCGGC--GUCCUCGUcgccgUCGGCGgCGc -3' miRNA: 3'- -GCCGCCGucCGGGAGCA-----AGCCGU-GCa -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 26652 | 0.69 | 0.551268 |
Target: 5'- aCGGCGGCcGGCUCg---UCGGCGgGg -3' miRNA: 3'- -GCCGCCGuCCGGGagcaAGCCGUgCa -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 570 | 0.69 | 0.541878 |
Target: 5'- gCGGUGGCAGG-UCUCGUuuacccUCGGUcCGUu -3' miRNA: 3'- -GCCGCCGUCCgGGAGCA------AGCCGuGCA- -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 119719 | 0.69 | 0.541878 |
Target: 5'- aCGGCGGCuucGGCaCCgggCGcUCGGCGUGUu -3' miRNA: 3'- -GCCGCCGu--CCG-GGa--GCaAGCCGUGCA- -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 119512 | 0.69 | 0.539071 |
Target: 5'- uCGGCGGCGcGGagccggccgcggacCCCUCGUccgCGGC-CGUc -3' miRNA: 3'- -GCCGCCGU-CC--------------GGGAGCAa--GCCGuGCA- -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 49020 | 0.69 | 0.532542 |
Target: 5'- gCGGCGGCcGcGgCgUCGUcCGGCGCGg -3' miRNA: 3'- -GCCGCCGuC-CgGgAGCAaGCCGUGCa -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 54839 | 0.69 | 0.532542 |
Target: 5'- uCGGCGGCAcccaacGCCCguaGgcCGGCGCGg -3' miRNA: 3'- -GCCGCCGUc-----CGGGag-CaaGCCGUGCa -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 72450 | 0.69 | 0.523264 |
Target: 5'- cCGGCGGCGccccgcgcccGGCCC-CGcggCGGCGCc- -3' miRNA: 3'- -GCCGCCGU----------CCGGGaGCaa-GCCGUGca -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 64820 | 0.69 | 0.523264 |
Target: 5'- aCGGCGGCGagccGGCgCCgacgacCGgaCGGCGCGg -3' miRNA: 3'- -GCCGCCGU----CCG-GGa-----GCaaGCCGUGCa -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 90571 | 0.69 | 0.51405 |
Target: 5'- cCGGCGGCGGGUCC-CG---GGCGCu- -3' miRNA: 3'- -GCCGCCGUCCGGGaGCaagCCGUGca -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 131530 | 0.69 | 0.504902 |
Target: 5'- uCGGCGcCGGGCCCgucaucacggccUCGcccguggUCGGCGCGg -3' miRNA: 3'- -GCCGCcGUCCGGG------------AGCa------AGCCGUGCa -5' |
|||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 151881 | 0.69 | 0.504902 |
Target: 5'- -cGUGGaaguGGCCCUCGaUUCGGCGCc- -3' miRNA: 3'- gcCGCCgu--CCGGGAGC-AAGCCGUGca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home