miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 570 0.69 0.541878
Target:  5'- gCGGUGGCAGG-UCUCGUuuacccUCGGUcCGUu -3'
miRNA:   3'- -GCCGCCGUCCgGGAGCA------AGCCGuGCA- -5'
11083 5' -62.3 NC_002794.1 + 8122 0.67 0.646959
Target:  5'- gGGCGGCGGcCuCCUCGgugacCGGCgACGg -3'
miRNA:   3'- gCCGCCGUCcG-GGAGCaa---GCCG-UGCa -5'
11083 5' -62.3 NC_002794.1 + 14496 0.72 0.355195
Target:  5'- gCGGCGGC-GGCCCgCGcucgCGGCGCu- -3'
miRNA:   3'- -GCCGCCGuCCGGGaGCaa--GCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 16221 0.66 0.723012
Target:  5'- aGGUccGGCGGGUCaggUCGggCuGGCACGUc -3'
miRNA:   3'- gCCG--CCGUCCGGg--AGCaaG-CCGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 18808 0.66 0.713668
Target:  5'- cCGGCcaacgGGUcGGCgaCCUCGgcCGGCGCGg -3'
miRNA:   3'- -GCCG-----CCGuCCG--GGAGCaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 19469 0.66 0.694804
Target:  5'- gCGGCGGCGGGaCCCgcCGgUCGcccGCACc- -3'
miRNA:   3'- -GCCGCCGUCC-GGGa-GCaAGC---CGUGca -5'
11083 5' -62.3 NC_002794.1 + 21933 0.71 0.393581
Target:  5'- gCGGCGGCGcGGCgCUCGUcgaaggccgUCGGC-CGc -3'
miRNA:   3'- -GCCGCCGU-CCGgGAGCA---------AGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 23724 0.73 0.319524
Target:  5'- gCGcGCGGCGGGCCCgaCGUaccuuccgaUCGaGCACGg -3'
miRNA:   3'- -GC-CGCCGUCCGGGa-GCA---------AGC-CGUGCa -5'
11083 5' -62.3 NC_002794.1 + 26652 0.69 0.551268
Target:  5'- aCGGCGGCcGGCUCg---UCGGCGgGg -3'
miRNA:   3'- -GCCGCCGuCCGGGagcaAGCCGUgCa -5'
11083 5' -62.3 NC_002794.1 + 34083 0.69 0.551268
Target:  5'- cCGGCGGcCGGGCagCCgUCGggCGGCcCGg -3'
miRNA:   3'- -GCCGCC-GUCCG--GG-AGCaaGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 36958 0.66 0.713668
Target:  5'- gCGGCGGCAGGCagUCGcgcaggaggaUCGcGCGCa- -3'
miRNA:   3'- -GCCGCCGUCCGggAGCa---------AGC-CGUGca -5'
11083 5' -62.3 NC_002794.1 + 37758 0.71 0.434557
Target:  5'- gCGGCGGCGccggcgggagcGGCCgUCGUcgUCGGC-CGc -3'
miRNA:   3'- -GCCGCCGU-----------CCGGgAGCA--AGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 38436 0.7 0.451626
Target:  5'- uGGCGGCGGGCCggacugaGgagcCGGCGCGg -3'
miRNA:   3'- gCCGCCGUCCGGgag----Caa--GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 40551 0.69 0.504902
Target:  5'- cCGGCGGCAuGaGCuUCUCGUUCGcGC-CGUc -3'
miRNA:   3'- -GCCGCCGU-C-CG-GGAGCAAGC-CGuGCA- -5'
11083 5' -62.3 NC_002794.1 + 41821 0.67 0.646959
Target:  5'- aGGCGcccaGCAGGCCCgUGgUCGGguCGa -3'
miRNA:   3'- gCCGC----CGUCCGGGaGCaAGCCguGCa -5'
11083 5' -62.3 NC_002794.1 + 44507 0.68 0.588307
Target:  5'- aCGGCGGCccagaccGGGCCCgUGUccgCGaGCGCGc -3'
miRNA:   3'- -GCCGCCG-------UCCGGGaGCAa--GC-CGUGCa -5'
11083 5' -62.3 NC_002794.1 + 44555 0.66 0.675754
Target:  5'- cCGGCGGCGGcGCCCguugaCGUcacgCGGgACc- -3'
miRNA:   3'- -GCCGCCGUC-CGGGa----GCAa---GCCgUGca -5'
11083 5' -62.3 NC_002794.1 + 48231 0.69 0.495825
Target:  5'- aGGCGGCc-GCCaUCGUUCGGC-CGc -3'
miRNA:   3'- gCCGCCGucCGGgAGCAAGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 48886 0.66 0.694804
Target:  5'- aGGUGGCAGGCCagCGUugccgcagcUCGGgGCc- -3'
miRNA:   3'- gCCGCCGUCCGGgaGCA---------AGCCgUGca -5'
11083 5' -62.3 NC_002794.1 + 49020 0.69 0.532542
Target:  5'- gCGGCGGCcGcGgCgUCGUcCGGCGCGg -3'
miRNA:   3'- -GCCGCCGuC-CgGgAGCAaGCCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.