miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 49419 0.72 0.362658
Target:  5'- gCGGCGGCGGcGgCCgucacggCGUcCGGCGCGg -3'
miRNA:   3'- -GCCGCCGUC-CgGGa------GCAaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 50770 0.71 0.409671
Target:  5'- gCGGCGGCGacGGCgcgUCUCGggCGGCGCc- -3'
miRNA:   3'- -GCCGCCGU--CCG---GGAGCaaGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 51062 0.66 0.704263
Target:  5'- aCGGCGGCGacGGCgaCCUCcgagcgUGGCGCGc -3'
miRNA:   3'- -GCCGCCGU--CCG--GGAGcaa---GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 51367 0.66 0.685298
Target:  5'- aGGCGGCc-GCCC-CGUcCGGC-CGg -3'
miRNA:   3'- gCCGCCGucCGGGaGCAaGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 52656 0.68 0.60845
Target:  5'- gCGGCGGCAGGCUCUgCGccaccgagaGGgACGc -3'
miRNA:   3'- -GCCGCCGUCCGGGA-GCaag------CCgUGCa -5'
11083 5' -62.3 NC_002794.1 + 53769 0.67 0.646959
Target:  5'- cCGGCGGCGGgacGCCCgcgacgCGccCGGCGgGUu -3'
miRNA:   3'- -GCCGCCGUC---CGGGa-----GCaaGCCGUgCA- -5'
11083 5' -62.3 NC_002794.1 + 53902 0.69 0.551268
Target:  5'- cCGGCGGC--GUCCUCGUcgccgUCGGCGgCGc -3'
miRNA:   3'- -GCCGCCGucCGGGAGCA-----AGCCGU-GCa -5'
11083 5' -62.3 NC_002794.1 + 54839 0.69 0.532542
Target:  5'- uCGGCGGCAcccaacGCCCguaGgcCGGCGCGg -3'
miRNA:   3'- -GCCGCCGUc-----CGGGag-CaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 55190 0.74 0.268173
Target:  5'- aGGCGGC-GGCCCUaacacCGGCGCGg -3'
miRNA:   3'- gCCGCCGuCCGGGAgcaa-GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 57406 0.67 0.61807
Target:  5'- cCGGCGcccGCGuGGCCggCGUgcuggUCGGCACGg -3'
miRNA:   3'- -GCCGC---CGU-CCGGgaGCA-----AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 58526 0.66 0.675754
Target:  5'- gGGCacGCcgAGGCCUUCGccgCGGCGCGc -3'
miRNA:   3'- gCCGc-CG--UCCGGGAGCaa-GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 60646 0.66 0.723012
Target:  5'- cCGGCGGCGccGGCCacc---CGGCGCGc -3'
miRNA:   3'- -GCCGCCGU--CCGGgagcaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 63323 0.68 0.589264
Target:  5'- cCGGCGGgGGGCCCgagcgCGgacCGGuCGCu- -3'
miRNA:   3'- -GCCGCCgUCCGGGa----GCaa-GCC-GUGca -5'
11083 5' -62.3 NC_002794.1 + 63477 0.66 0.723012
Target:  5'- aGGCGGCGGccGCCgUCGacgacgccgCGGCGuCGUc -3'
miRNA:   3'- gCCGCCGUC--CGGgAGCaa-------GCCGU-GCA- -5'
11083 5' -62.3 NC_002794.1 + 64820 0.69 0.523264
Target:  5'- aCGGCGGCGagccGGCgCCgacgacCGgaCGGCGCGg -3'
miRNA:   3'- -GCCGCCGU----CCG-GGa-----GCaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 67959 0.68 0.57971
Target:  5'- aGGaCGGCGGGCCCagaCGggUCGGuCGCu- -3'
miRNA:   3'- gCC-GCCGUCCGGGa--GCa-AGCC-GUGca -5'
11083 5' -62.3 NC_002794.1 + 70873 0.68 0.589264
Target:  5'- gCGGCGGCAgcggcGGCuCCUCGagCGccaggucggugaGCACGUc -3'
miRNA:   3'- -GCCGCCGU-----CCG-GGAGCaaGC------------CGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 71236 0.66 0.723012
Target:  5'- -aGUGGC-GGCCggCGUggacCGGCACGUa -3'
miRNA:   3'- gcCGCCGuCCGGgaGCAa---GCCGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 72377 0.67 0.645996
Target:  5'- -cGCGGCcccGGCCgUCGUcuugaacUCGaGCACGUa -3'
miRNA:   3'- gcCGCCGu--CCGGgAGCA-------AGC-CGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 72450 0.69 0.523264
Target:  5'- cCGGCGGCGccccgcgcccGGCCC-CGcggCGGCGCc- -3'
miRNA:   3'- -GCCGCCGU----------CCGGGaGCaa-GCCGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.