miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 74073 0.66 0.723012
Target:  5'- aGGUGGC-GGCCCUCcucgccgagUCGGgACa- -3'
miRNA:   3'- gCCGCCGuCCGGGAGca-------AGCCgUGca -5'
11083 5' -62.3 NC_002794.1 + 79434 0.67 0.627699
Target:  5'- cCGGCGGCGGcGgCggCGacCGGCGCGg -3'
miRNA:   3'- -GCCGCCGUC-CgGgaGCaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 80442 0.68 0.598846
Target:  5'- cCGGCGGCcgccGGCCCgUCGg-CGGCcCGc -3'
miRNA:   3'- -GCCGCCGu---CCGGG-AGCaaGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 82050 0.66 0.704263
Target:  5'- gCGGCGGCGGcGgCgUCGUccUCGGCcuCGc -3'
miRNA:   3'- -GCCGCCGUC-CgGgAGCA--AGCCGu-GCa -5'
11083 5' -62.3 NC_002794.1 + 83873 0.67 0.61807
Target:  5'- cCGGuCGGCGcgacGGCCC-CGggcUCGGCGCc- -3'
miRNA:   3'- -GCC-GCCGU----CCGGGaGCa--AGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 86032 0.66 0.694804
Target:  5'- gCGGCGGaCAGGCCUcaUCGggcCGGguCu- -3'
miRNA:   3'- -GCCGCC-GUCCGGG--AGCaa-GCCguGca -5'
11083 5' -62.3 NC_002794.1 + 87361 0.71 0.393581
Target:  5'- cCGGCGGCGagcGGCgUUCuGggCGGCGCGg -3'
miRNA:   3'- -GCCGCCGU---CCGgGAG-CaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 90571 0.69 0.51405
Target:  5'- cCGGCGGCGGGUCC-CG---GGCGCu- -3'
miRNA:   3'- -GCCGCCGUCCGGGaGCaagCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 91738 0.66 0.713668
Target:  5'- uCGGCGGCcaacaAGGUgCCggCGggCGGCACc- -3'
miRNA:   3'- -GCCGCCG-----UCCG-GGa-GCaaGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 92266 0.66 0.713668
Target:  5'- uGGCGGCGGcGCCgggCGa--GGCGCGc -3'
miRNA:   3'- gCCGCCGUC-CGGga-GCaagCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 92321 0.75 0.239593
Target:  5'- gGGCGGCggGGGCCCgggCGggCGGCucgGCGUc -3'
miRNA:   3'- gCCGCCG--UCCGGGa--GCaaGCCG---UGCA- -5'
11083 5' -62.3 NC_002794.1 + 92506 0.7 0.460297
Target:  5'- aGGCGGCcauGGCCCUgGUguccgaGGUGCGc -3'
miRNA:   3'- gCCGCCGu--CCGGGAgCAag----CCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 94031 0.7 0.486822
Target:  5'- cCGcCGGCGGGCCCgagagCGgcggCGGUGCGg -3'
miRNA:   3'- -GCcGCCGUCCGGGa----GCaa--GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 94064 0.66 0.694804
Target:  5'- gGGCGGCggggggcgaGGGCaCCUaCGaccugUCGGCGCu- -3'
miRNA:   3'- gCCGCCG---------UCCG-GGA-GCa----AGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 98975 0.67 0.646959
Target:  5'- uCGGCGGCGccguGG-CCUCGguggUCGGCGgcuuCGUc -3'
miRNA:   3'- -GCCGCCGU----CCgGGAGCa---AGCCGU----GCA- -5'
11083 5' -62.3 NC_002794.1 + 100455 0.66 0.675754
Target:  5'- gCGGCGGCGGcGCCUUCc--CGGUgGCGg -3'
miRNA:   3'- -GCCGCCGUC-CGGGAGcaaGCCG-UGCa -5'
11083 5' -62.3 NC_002794.1 + 101494 0.74 0.280355
Target:  5'- cCGGCGGCcGGUCCgagCGgugCGGCACa- -3'
miRNA:   3'- -GCCGCCGuCCGGGa--GCaa-GCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 102154 0.68 0.598846
Target:  5'- uCGGCGGCgugcgcgccgGGGCCaUCGU--GGCGCGc -3'
miRNA:   3'- -GCCGCCG----------UCCGGgAGCAagCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 105445 0.66 0.704263
Target:  5'- cCGGCGGC--GCCgUCGUUCuGCcCGUu -3'
miRNA:   3'- -GCCGCCGucCGGgAGCAAGcCGuGCA- -5'
11083 5' -62.3 NC_002794.1 + 106357 0.68 0.57971
Target:  5'- aCGGCgGGCGGGCgCCg-GUUC-GCGCGg -3'
miRNA:   3'- -GCCG-CCGUCCG-GGagCAAGcCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.