miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 191681 0.71 0.401575
Target:  5'- gCGGCGGCGGcguGCCCUCGUcgCGGacCACc- -3'
miRNA:   3'- -GCCGCCGUC---CGGGAGCAa-GCC--GUGca -5'
11083 5' -62.3 NC_002794.1 + 191000 0.7 0.469055
Target:  5'- aCGGCGucGCGaucGGCCgUUCGaUCGGCACGUu -3'
miRNA:   3'- -GCCGC--CGU---CCGG-GAGCaAGCCGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 186284 0.68 0.598846
Target:  5'- gCGGCGGCAccgcggccaggcGGCCggUCGccgCGGCGCGc -3'
miRNA:   3'- -GCCGCCGU------------CCGGg-AGCaa-GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 184580 0.68 0.598846
Target:  5'- gCGGCGGCGgcGGCCa-CGcgCGGcCGCGg -3'
miRNA:   3'- -GCCGCCGU--CCGGgaGCaaGCC-GUGCa -5'
11083 5' -62.3 NC_002794.1 + 184506 0.79 0.126349
Target:  5'- gGGCGGCgcGGGCCCcgCGcgCGGCGCGg -3'
miRNA:   3'- gCCGCCG--UCCGGGa-GCaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 184051 0.66 0.704263
Target:  5'- gCGGUcGCGGGCCgCggCGaagCGGCACGc -3'
miRNA:   3'- -GCCGcCGUCCGG-Ga-GCaa-GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 182964 0.78 0.153419
Target:  5'- aCGGCGGCcGGCuCCUCGUUCGaGCcgACGg -3'
miRNA:   3'- -GCCGCCGuCCG-GGAGCAAGC-CG--UGCa -5'
11083 5' -62.3 NC_002794.1 + 179210 0.67 0.666177
Target:  5'- cCGGCGGCAcgacggacguGGCCCagaugcaacaggUCGgcgUCGGCGa-- -3'
miRNA:   3'- -GCCGCCGU----------CCGGG------------AGCa--AGCCGUgca -5'
11083 5' -62.3 NC_002794.1 + 176608 0.68 0.560706
Target:  5'- gCGGcCGGCAcGGCCauccucguggCGUUCGGCcCGg -3'
miRNA:   3'- -GCC-GCCGU-CCGGga--------GCAAGCCGuGCa -5'
11083 5' -62.3 NC_002794.1 + 154381 0.66 0.685298
Target:  5'- gCGGCGGCGGGCacgCC-CGUUCgcguGGUGCc- -3'
miRNA:   3'- -GCCGCCGUCCG---GGaGCAAG----CCGUGca -5'
11083 5' -62.3 NC_002794.1 + 154038 0.67 0.663299
Target:  5'- gCGGCGGUugccguguaugcagGGGCgCCU-GUgcaucaUCGGCACGa -3'
miRNA:   3'- -GCCGCCG--------------UCCG-GGAgCA------AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 152604 0.66 0.713668
Target:  5'- gCGGC-GCGGGCCCaag--CGGCGCa- -3'
miRNA:   3'- -GCCGcCGUCCGGGagcaaGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 151881 0.69 0.504902
Target:  5'- -cGUGGaaguGGCCCUCGaUUCGGCGCc- -3'
miRNA:   3'- gcCGCCgu--CCGGGAGC-AAGCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 151583 0.68 0.564494
Target:  5'- cCGGCGGCgcgcgccgccgccgcGGGCCCgCGguuccUCGGCugACGg -3'
miRNA:   3'- -GCCGCCG---------------UCCGGGaGCa----AGCCG--UGCa -5'
11083 5' -62.3 NC_002794.1 + 147985 0.66 0.704263
Target:  5'- uGGCGGUgucccugcuGGCCUUCGUccgcgUCGGCcuCGg -3'
miRNA:   3'- gCCGCCGu--------CCGGGAGCA-----AGCCGu-GCa -5'
11083 5' -62.3 NC_002794.1 + 145590 0.7 0.443045
Target:  5'- gCGGCGGCcGGCUCccgCGgagUCGgGCGCGa -3'
miRNA:   3'- -GCCGCCGuCCGGGa--GCa--AGC-CGUGCa -5'
11083 5' -62.3 NC_002794.1 + 145394 0.67 0.646959
Target:  5'- uCGGUGGCGcgccgcgcGGCCUUaaaGcgCGGCGCGc -3'
miRNA:   3'- -GCCGCCGU--------CCGGGAg--CaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 145330 0.66 0.685298
Target:  5'- gGGCGGCgcucGGGCCCgagCGggccCGaGCugGg -3'
miRNA:   3'- gCCGCCG----UCCGGGa--GCaa--GC-CGugCa -5'
11083 5' -62.3 NC_002794.1 + 141429 0.67 0.637331
Target:  5'- gGGCGGCggGGGCgCCgggggcgcCGggagCGGCGCGg -3'
miRNA:   3'- gCCGCCG--UCCG-GGa-------GCaa--GCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 140525 0.78 0.152315
Target:  5'- uGGCGGCAGGCCCUCGggCaacaaaucgccgagGGaCGCGa -3'
miRNA:   3'- gCCGCCGUCCGGGAGCaaG--------------CC-GUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.