miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11083 5' -62.3 NC_002794.1 + 139903 0.73 0.333462
Target:  5'- gGGCcagccGCAGGCCgUCGgaCGGCACGc -3'
miRNA:   3'- gCCGc----CGUCCGGgAGCaaGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 138444 0.66 0.685298
Target:  5'- uGGCGGC-GGCgCCUCGgcCuGCgACGUg -3'
miRNA:   3'- gCCGCCGuCCG-GGAGCaaGcCG-UGCA- -5'
11083 5' -62.3 NC_002794.1 + 134175 0.66 0.694804
Target:  5'- cCGcGCGGauGGCcaCCUCGUaUCGGCugGUg -3'
miRNA:   3'- -GC-CGCCguCCG--GGAGCA-AGCCGugCA- -5'
11083 5' -62.3 NC_002794.1 + 132910 0.73 0.333462
Target:  5'- gCGGCGGCcGGUCaCUCGUUccCGGUugGa -3'
miRNA:   3'- -GCCGCCGuCCGG-GAGCAA--GCCGugCa -5'
11083 5' -62.3 NC_002794.1 + 131530 0.69 0.504902
Target:  5'- uCGGCGcCGGGCCCgucaucacggccUCGcccguggUCGGCGCGg -3'
miRNA:   3'- -GCCGCcGUCCGGG------------AGCa------AGCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 128160 0.66 0.722081
Target:  5'- aCGGCGGCucgcgccgcggacGGGUcggugaCCUCG-UCGGuCGCGa -3'
miRNA:   3'- -GCCGCCG-------------UCCG------GGAGCaAGCC-GUGCa -5'
11083 5' -62.3 NC_002794.1 + 127362 0.78 0.157151
Target:  5'- gCGGCGGCGcGGCCgCUCGUgUCGGCggACGg -3'
miRNA:   3'- -GCCGCCGU-CCGG-GAGCA-AGCCG--UGCa -5'
11083 5' -62.3 NC_002794.1 + 123794 0.67 0.61807
Target:  5'- aGGCGGUGGcGCCgUUCGgg-GGCGCGg -3'
miRNA:   3'- gCCGCCGUC-CGG-GAGCaagCCGUGCa -5'
11083 5' -62.3 NC_002794.1 + 123013 0.68 0.586395
Target:  5'- gGGcCGGCuGGCCgUCGUguuccccgacaacgUCGGCGUGUa -3'
miRNA:   3'- gCC-GCCGuCCGGgAGCA--------------AGCCGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 122665 0.67 0.656577
Target:  5'- uGGCGGCgcAGGCCCggcUGUgcCGGuCGCGc -3'
miRNA:   3'- gCCGCCG--UCCGGGa--GCAa-GCC-GUGCa -5'
11083 5' -62.3 NC_002794.1 + 121316 0.75 0.245098
Target:  5'- uCGGCGGUuGGCCCUCGa--GGCGCc- -3'
miRNA:   3'- -GCCGCCGuCCGGGAGCaagCCGUGca -5'
11083 5' -62.3 NC_002794.1 + 120996 0.68 0.598846
Target:  5'- gCGGCGGCGGGCCauggcCGagggUCGGC-Cu- -3'
miRNA:   3'- -GCCGCCGUCCGGga---GCa---AGCCGuGca -5'
11083 5' -62.3 NC_002794.1 + 120839 0.67 0.637331
Target:  5'- aCGGgGGCuaucccugcgcGGCCgUCGUccagcgccUCGGCugGUg -3'
miRNA:   3'- -GCCgCCGu----------CCGGgAGCA--------AGCCGugCA- -5'
11083 5' -62.3 NC_002794.1 + 119719 0.69 0.541878
Target:  5'- aCGGCGGCuucGGCaCCgggCGcUCGGCGUGUu -3'
miRNA:   3'- -GCCGCCGu--CCG-GGa--GCaAGCCGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 119512 0.69 0.539071
Target:  5'- uCGGCGGCGcGGagccggccgcggacCCCUCGUccgCGGC-CGUc -3'
miRNA:   3'- -GCCGCCGU-CC--------------GGGAGCAa--GCCGuGCA- -5'
11083 5' -62.3 NC_002794.1 + 119131 0.67 0.627699
Target:  5'- aGGCcuGGCAGGCgUUCGggUGGuCGCGc -3'
miRNA:   3'- gCCG--CCGUCCGgGAGCaaGCC-GUGCa -5'
11083 5' -62.3 NC_002794.1 + 118691 0.68 0.586395
Target:  5'- cCGGCGGCAGcGCCCagGagCGcaugauggccagcuGCGCGUa -3'
miRNA:   3'- -GCCGCCGUC-CGGGagCaaGC--------------CGUGCA- -5'
11083 5' -62.3 NC_002794.1 + 117492 0.71 0.393581
Target:  5'- uGGCGuGCAGGUCCUCGaUCaGGUGCu- -3'
miRNA:   3'- gCCGC-CGUCCGGGAGCaAG-CCGUGca -5'
11083 5' -62.3 NC_002794.1 + 117200 0.68 0.589264
Target:  5'- uCGGCGuCGGGCCCgggCGgcucCGGcCGCGUc -3'
miRNA:   3'- -GCCGCcGUCCGGGa--GCaa--GCC-GUGCA- -5'
11083 5' -62.3 NC_002794.1 + 116907 0.7 0.451626
Target:  5'- cCGGCGGCcGGUCCggCG-UCGGCuccgGCGUc -3'
miRNA:   3'- -GCCGCCGuCCGGGa-GCaAGCCG----UGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.