Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11083 | 5' | -62.3 | NC_002794.1 | + | 128160 | 0.66 | 0.722081 |
Target: 5'- aCGGCGGCucgcgccgcggacGGGUcggugaCCUCG-UCGGuCGCGa -3' miRNA: 3'- -GCCGCCG-------------UCCG------GGAGCaAGCC-GUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 63477 | 0.66 | 0.723012 |
Target: 5'- aGGCGGCGGccGCCgUCGacgacgccgCGGCGuCGUc -3' miRNA: 3'- gCCGCCGUC--CGGgAGCaa-------GCCGU-GCA- -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 16221 | 0.66 | 0.723012 |
Target: 5'- aGGUccGGCGGGUCaggUCGggCuGGCACGUc -3' miRNA: 3'- gCCG--CCGUCCGGg--AGCaaG-CCGUGCA- -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 60646 | 0.66 | 0.723012 |
Target: 5'- cCGGCGGCGccGGCCacc---CGGCGCGc -3' miRNA: 3'- -GCCGCCGU--CCGGgagcaaGCCGUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 74073 | 0.66 | 0.723012 |
Target: 5'- aGGUGGC-GGCCCUCcucgccgagUCGGgACa- -3' miRNA: 3'- gCCGCCGuCCGGGAGca-------AGCCgUGca -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 184051 | 0.66 | 0.704263 |
Target: 5'- gCGGUcGCGGGCCgCggCGaagCGGCACGc -3' miRNA: 3'- -GCCGcCGUCCGG-Ga-GCaa-GCCGUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 51062 | 0.66 | 0.704263 |
Target: 5'- aCGGCGGCGacGGCgaCCUCcgagcgUGGCGCGc -3' miRNA: 3'- -GCCGCCGU--CCG--GGAGcaa---GCCGUGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 100455 | 0.66 | 0.675754 |
Target: 5'- gCGGCGGCGGcGCCUUCc--CGGUgGCGg -3' miRNA: 3'- -GCCGCCGUC-CGGGAGcaaGCCG-UGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 154381 | 0.66 | 0.685298 |
Target: 5'- gCGGCGGCGGGCacgCC-CGUUCgcguGGUGCc- -3' miRNA: 3'- -GCCGCCGUCCG---GGaGCAAG----CCGUGca -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 138444 | 0.66 | 0.685298 |
Target: 5'- uGGCGGC-GGCgCCUCGgcCuGCgACGUg -3' miRNA: 3'- gCCGCCGuCCG-GGAGCaaGcCG-UGCA- -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 51367 | 0.66 | 0.685298 |
Target: 5'- aGGCGGCc-GCCC-CGUcCGGC-CGg -3' miRNA: 3'- gCCGCCGucCGGGaGCAaGCCGuGCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 44555 | 0.66 | 0.675754 |
Target: 5'- cCGGCGGCGGcGCCCguugaCGUcacgCGGgACc- -3' miRNA: 3'- -GCCGCCGUC-CGGGa----GCAa---GCCgUGca -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 145330 | 0.66 | 0.685298 |
Target: 5'- gGGCGGCgcucGGGCCCgagCGggccCGaGCugGg -3' miRNA: 3'- gCCGCCG----UCCGGGa--GCaa--GC-CGugCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 19469 | 0.66 | 0.694804 |
Target: 5'- gCGGCGGCGGGaCCCgcCGgUCGcccGCACc- -3' miRNA: 3'- -GCCGCCGUCC-GGGa-GCaAGC---CGUGca -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 86032 | 0.66 | 0.694804 |
Target: 5'- gCGGCGGaCAGGCCUcaUCGggcCGGguCu- -3' miRNA: 3'- -GCCGCC-GUCCGGG--AGCaa-GCCguGca -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 48886 | 0.66 | 0.694804 |
Target: 5'- aGGUGGCAGGCCagCGUugccgcagcUCGGgGCc- -3' miRNA: 3'- gCCGCCGUCCGGgaGCA---------AGCCgUGca -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 134175 | 0.66 | 0.694804 |
Target: 5'- cCGcGCGGauGGCcaCCUCGUaUCGGCugGUg -3' miRNA: 3'- -GC-CGCCguCCG--GGAGCA-AGCCGugCA- -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 94064 | 0.66 | 0.694804 |
Target: 5'- gGGCGGCggggggcgaGGGCaCCUaCGaccugUCGGCGCu- -3' miRNA: 3'- gCCGCCG---------UCCG-GGA-GCa----AGCCGUGca -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 147985 | 0.66 | 0.704263 |
Target: 5'- uGGCGGUgucccugcuGGCCUUCGUccgcgUCGGCcuCGg -3' miRNA: 3'- gCCGCCGu--------CCGGGAGCA-----AGCCGu-GCa -5' |
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11083 | 5' | -62.3 | NC_002794.1 | + | 82050 | 0.66 | 0.704263 |
Target: 5'- gCGGCGGCGGcGgCgUCGUccUCGGCcuCGc -3' miRNA: 3'- -GCCGCCGUC-CgGgAGCA--AGCCGu-GCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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