miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11084 5' -55.3 NC_002794.1 + 193651 0.66 0.961678
Target:  5'- ---cCCGGUcgGCUCCGgcGCGCCcCGAc -3'
miRNA:   3'- caucGGCCAuaUGGGGU--UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 72174 0.66 0.961678
Target:  5'- --uGCCGGUAgGCCgCgAACGCUUUGc -3'
miRNA:   3'- cauCGGCCAUaUGG-GgUUGCGGAGCu -5'
11084 5' -55.3 NC_002794.1 + 8076 0.66 0.961678
Target:  5'- -aAGaCGGUGUuCCCCAugGCCa--- -3'
miRNA:   3'- caUCgGCCAUAuGGGGUugCGGagcu -5'
11084 5' -55.3 NC_002794.1 + 184482 0.66 0.961678
Target:  5'- cGgcGCgCGGg--GCCCCGgACGCC-CGGg -3'
miRNA:   3'- -CauCG-GCCauaUGGGGU-UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 96729 0.66 0.961678
Target:  5'- -gAGCCGGcgacgACCgCCGGCGCgUCu- -3'
miRNA:   3'- caUCGGCCaua--UGG-GGUUGCGgAGcu -5'
11084 5' -55.3 NC_002794.1 + 183666 0.66 0.958131
Target:  5'- --cGCCGG---GCCCgAGCGCCgacgggUCGAg -3'
miRNA:   3'- cauCGGCCauaUGGGgUUGCGG------AGCU- -5'
11084 5' -55.3 NC_002794.1 + 55414 0.66 0.958131
Target:  5'- -cGGCCGaGgcgACCCCGGCGUCcgCGu -3'
miRNA:   3'- caUCGGC-CauaUGGGGUUGCGGa-GCu -5'
11084 5' -55.3 NC_002794.1 + 143836 0.66 0.958131
Target:  5'- -cGGCCGGU-----CCGACGCCUCc- -3'
miRNA:   3'- caUCGGCCAuauggGGUUGCGGAGcu -5'
11084 5' -55.3 NC_002794.1 + 307 0.66 0.958131
Target:  5'- --cGCCGGgcccGCCCCAcccccacgcgcGCGCCgcCGAc -3'
miRNA:   3'- cauCGGCCaua-UGGGGU-----------UGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 65361 0.66 0.958131
Target:  5'- gGgcGCCGGc--GCCCUGACGCCacaCGGc -3'
miRNA:   3'- -CauCGGCCauaUGGGGUUGCGGa--GCU- -5'
11084 5' -55.3 NC_002794.1 + 85013 0.66 0.957765
Target:  5'- --cGCuCGG-GUGCCCCGGgcccacgcucgggUGCCUCGGg -3'
miRNA:   3'- cauCG-GCCaUAUGGGGUU-------------GCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 120146 0.66 0.954367
Target:  5'- -gGGCCGGU--GCCggaCGACGaggaCCUCGAg -3'
miRNA:   3'- caUCGGCCAuaUGGg--GUUGC----GGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 77010 0.66 0.954367
Target:  5'- ---aCCGGgAUGCCgCCGGCGCacCUCGAc -3'
miRNA:   3'- caucGGCCaUAUGG-GGUUGCG--GAGCU- -5'
11084 5' -55.3 NC_002794.1 + 63633 0.66 0.953194
Target:  5'- -cGGCCGagcaccucgucugcGUG-ACCgCCAACGUCUCGGa -3'
miRNA:   3'- caUCGGC--------------CAUaUGG-GGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 70512 0.66 0.952001
Target:  5'- -gAGCCGGUccaGCCCgugcucguaaugaaaCAgcagccgaucguGCGCCUCGAg -3'
miRNA:   3'- caUCGGCCAua-UGGG---------------GU------------UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 72565 0.66 0.952001
Target:  5'- -cGGCCGGgaagaGCCCgcccaacagcgcguuCAGCGCgUCGAa -3'
miRNA:   3'- caUCGGCCaua--UGGG---------------GUUGCGgAGCU- -5'
11084 5' -55.3 NC_002794.1 + 82187 0.66 0.95038
Target:  5'- -aAGcCCGGgc-GCCCCgAGCGCC-CGGc -3'
miRNA:   3'- caUC-GGCCauaUGGGG-UUGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 68945 0.66 0.95038
Target:  5'- -gGGCCGcg--GCgCCGGCGCCUCu- -3'
miRNA:   3'- caUCGGCcauaUGgGGUUGCGGAGcu -5'
11084 5' -55.3 NC_002794.1 + 108291 0.66 0.946167
Target:  5'- -aGGcCCGGUAUcugAUCCCGuuGCGCCggCGGu -3'
miRNA:   3'- caUC-GGCCAUA---UGGGGU--UGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 107515 0.66 0.946167
Target:  5'- --uGCCGGUcgACgCCGACgGCCggcgCGGc -3'
miRNA:   3'- cauCGGCCAuaUGgGGUUG-CGGa---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.