Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11084 | 5' | -55.3 | NC_002794.1 | + | 18727 | 0.7 | 0.805974 |
Target: 5'- -gAGCCGacgagccGCCCCAACGCCaCGAc -3' miRNA: 3'- caUCGGCcaua---UGGGGUUGCGGaGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 119598 | 0.69 | 0.831501 |
Target: 5'- --cGUCGcaGUcGCUCCAGCGCCUCGAg -3' miRNA: 3'- cauCGGCcaUA-UGGGGUUGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 186304 | 0.69 | 0.870413 |
Target: 5'- -cGGCCGGUc-GCCgCGGCGCgCUCGu -3' miRNA: 3'- caUCGGCCAuaUGGgGUUGCG-GAGCu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 122685 | 0.69 | 0.847645 |
Target: 5'- --uGCCGGUc-GCgCCAGCGCCgggCGAc -3' miRNA: 3'- cauCGGCCAuaUGgGGUUGCGGa--GCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 180787 | 0.69 | 0.839665 |
Target: 5'- gGUGGCCGGggauCUCCGuuugagcgACGUCUCGGa -3' miRNA: 3'- -CAUCGGCCauauGGGGU--------UGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 194019 | 0.69 | 0.855434 |
Target: 5'- -cGGCCGcc--GCCgCCGGCGCCUCGc -3' miRNA: 3'- caUCGGCcauaUGG-GGUUGCGGAGCu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 74386 | 0.68 | 0.891303 |
Target: 5'- -cGGCCGGcgcgacUACacgaCCgAGCGCCUCGAc -3' miRNA: 3'- caUCGGCCau----AUGg---GG-UUGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 181676 | 0.68 | 0.904124 |
Target: 5'- --cGuuGGUGUGCgcggaCCGccGCGCCUCGGc -3' miRNA: 3'- cauCggCCAUAUGg----GGU--UGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 98096 | 0.68 | 0.904124 |
Target: 5'- uUGGCgGGUAU-CCCCggUGCCaaCGGg -3' miRNA: 3'- cAUCGgCCAUAuGGGGuuGCGGa-GCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 86599 | 0.68 | 0.904124 |
Target: 5'- -gAGCCGGgacggAUGCUCCGGCucgaGCC-CGAc -3' miRNA: 3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 63081 | 0.68 | 0.904124 |
Target: 5'- -gGGCCGGcUGUACUUCAGCGCgCUg-- -3' miRNA: 3'- caUCGGCC-AUAUGGGGUUGCG-GAgcu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 86647 | 0.68 | 0.904124 |
Target: 5'- -gAGCCGGgacggAUGCUCCGGCccgaGCC-CGAc -3' miRNA: 3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 37777 | 0.68 | 0.884556 |
Target: 5'- -cGGCCGucgucGUcgGCCgCAgGCGCCUCGAc -3' miRNA: 3'- caUCGGC-----CAuaUGGgGU-UGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 86287 | 0.68 | 0.904124 |
Target: 5'- -gAGCCGGgacggAUGCUCCGGCccgaGCC-CGAc -3' miRNA: 3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 37996 | 0.68 | 0.900373 |
Target: 5'- -cAGCCGGgccacgccguagGCCUgCAGCGCUUCGGg -3' miRNA: 3'- caUCGGCCaua---------UGGG-GUUGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 67335 | 0.68 | 0.884556 |
Target: 5'- --cGCCaGG-GUGCCCCGGCGCCg--- -3' miRNA: 3'- cauCGG-CCaUAUGGGGUUGCGGagcu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 116911 | 0.68 | 0.884556 |
Target: 5'- -cGGCCGGUccggcgucgGCUCCGGCGUCgUCGGc -3' miRNA: 3'- caUCGGCCAua-------UGGGGUUGCGG-AGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 45022 | 0.68 | 0.891303 |
Target: 5'- cGUGGCCGGgugcuccGCaCCCAGCGCgguggCGAg -3' miRNA: 3'- -CAUCGGCCaua----UG-GGGUUGCGga---GCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 63934 | 0.68 | 0.884556 |
Target: 5'- -cGGCCGGcgagucucgAgUCCGACGCCUCGc -3' miRNA: 3'- caUCGGCCaua------UgGGGUUGCGGAGCu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 182012 | 0.68 | 0.884556 |
Target: 5'- -aAGcCCGGg--ACCCCGGCGUC-CGGg -3' miRNA: 3'- caUC-GGCCauaUGGGGUUGCGGaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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