miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11084 5' -55.3 NC_002794.1 + 190938 0.85 0.161924
Target:  5'- -cAGCCGGUAgcacgGCCCCAgcagcaccaGCGCCUCGGg -3'
miRNA:   3'- caUCGGCCAUa----UGGGGU---------UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 39467 0.76 0.483934
Target:  5'- gGUGGCCGGgcucUACCUCAuCGuCCUCGAa -3'
miRNA:   3'- -CAUCGGCCau--AUGGGGUuGC-GGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 152142 0.76 0.483934
Target:  5'- -gAGCCGGUucaacccGCUCCAGCGCCUgCGGg -3'
miRNA:   3'- caUCGGCCAua-----UGGGGUUGCGGA-GCU- -5'
11084 5' -55.3 NC_002794.1 + 19547 0.74 0.58146
Target:  5'- --cGCCGGUGUcggACCCgGACuGCUUCGAg -3'
miRNA:   3'- cauCGGCCAUA---UGGGgUUG-CGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 145525 0.73 0.621784
Target:  5'- -aGGCCGG----CCCgAGCGCCUCGGg -3'
miRNA:   3'- caUCGGCCauauGGGgUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 102299 0.73 0.662227
Target:  5'- -cGGCCGGgucuucgGCUCCGACGCgCUCGu -3'
miRNA:   3'- caUCGGCCaua----UGGGGUUGCG-GAGCu -5'
11084 5' -55.3 NC_002794.1 + 150534 0.73 0.672298
Target:  5'- cGUAGCCGGgccgGCgCCAugGCCgucUCGGc -3'
miRNA:   3'- -CAUCGGCCaua-UGgGGUugCGG---AGCU- -5'
11084 5' -55.3 NC_002794.1 + 86383 0.71 0.750994
Target:  5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86191 0.71 0.750994
Target:  5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 94608 0.71 0.750994
Target:  5'- --uGCUGGUGgacucgGCCCCGuucaagaggaACGCCUUGAc -3'
miRNA:   3'- cauCGGCCAUa-----UGGGGU----------UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 86551 0.71 0.750994
Target:  5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86503 0.71 0.750994
Target:  5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86335 0.71 0.750994
Target:  5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86143 0.71 0.779063
Target:  5'- -gAGCCGGgacggAUGCUCCGggccACGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 176012 0.71 0.779063
Target:  5'- gGUGGCCGGUGUAUCUCGuAUGUUUCu- -3'
miRNA:   3'- -CAUCGGCCAUAUGGGGU-UGCGGAGcu -5'
11084 5' -55.3 NC_002794.1 + 183619 0.7 0.805974
Target:  5'- -cGGCCGGc--GCCCCcGCGCCccCGAc -3'
miRNA:   3'- caUCGGCCauaUGGGGuUGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 18727 0.7 0.805974
Target:  5'- -gAGCCGacgagccGCCCCAACGCCaCGAc -3'
miRNA:   3'- caUCGGCcaua---UGGGGUUGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 24010 0.7 0.814648
Target:  5'- -gGGCCGccGUcACCgCGGCGCCUCGGc -3'
miRNA:   3'- caUCGGCcaUA-UGGgGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 82457 0.7 0.814648
Target:  5'- -cGGUCGGcccgACCUCGACGCCgUCGGc -3'
miRNA:   3'- caUCGGCCaua-UGGGGUUGCGG-AGCU- -5'
11084 5' -55.3 NC_002794.1 + 79283 0.7 0.823159
Target:  5'- -cGGCCGcGUcuuuuccugcGUGgCCgAGCGCCUCGAu -3'
miRNA:   3'- caUCGGC-CA----------UAUgGGgUUGCGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.