miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11084 5' -55.3 NC_002794.1 + 135377 0.66 0.946167
Target:  5'- -gGGUCGGUuuAUACUCagagAGCGUCUCGGa -3'
miRNA:   3'- caUCGGCCA--UAUGGGg---UUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 104427 0.66 0.941725
Target:  5'- -cGGCCGccg-GCCCgGACGCCgccgCGGg -3'
miRNA:   3'- caUCGGCcauaUGGGgUUGCGGa---GCU- -5'
11084 5' -55.3 NC_002794.1 + 36442 0.66 0.941725
Target:  5'- aGgcGCCGGagcUGCUCUuugAACGUCUCGAa -3'
miRNA:   3'- -CauCGGCCau-AUGGGG---UUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 180682 0.67 0.937053
Target:  5'- --cGCCGGcc-GCuCCCGGCGCC-CGGc -3'
miRNA:   3'- cauCGGCCauaUG-GGGUUGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 31533 0.67 0.937053
Target:  5'- --uGCgCGGcgaGCCCCGACGUCUcCGAg -3'
miRNA:   3'- cauCG-GCCauaUGGGGUUGCGGA-GCU- -5'
11084 5' -55.3 NC_002794.1 + 17583 0.67 0.937053
Target:  5'- ---aCCGGacccgacGCCaCCGACGCCUCGGu -3'
miRNA:   3'- caucGGCCaua----UGG-GGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 193726 0.67 0.932148
Target:  5'- --cGCCGGUGU-CCUCGcCGCCcgCGGc -3'
miRNA:   3'- cauCGGCCAUAuGGGGUuGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 98973 0.67 0.927009
Target:  5'- --cGUCGGcg-GCgCCGugGCCUCGGu -3'
miRNA:   3'- cauCGGCCauaUGgGGUugCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 14636 0.67 0.921637
Target:  5'- -gGGCCGGgcacggagACgCCGGCGCCgCGGc -3'
miRNA:   3'- caUCGGCCaua-----UGgGGUUGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 137499 0.67 0.921637
Target:  5'- -cGGUCGGUuccuCCgCCGGCGUUUCGAc -3'
miRNA:   3'- caUCGGCCAuau-GG-GGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 144947 0.67 0.921637
Target:  5'- --uGCUGGaccaccUGUGucuCCUCGGCGCCUCGAc -3'
miRNA:   3'- cauCGGCC------AUAU---GGGGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 178197 0.67 0.921637
Target:  5'- -cGGCCGGcUGacUGCCCUcgguaGCCUCGGc -3'
miRNA:   3'- caUCGGCC-AU--AUGGGGuug--CGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 14209 0.67 0.916031
Target:  5'- --cGCUGGcc-GCCCCAACGCCa--- -3'
miRNA:   3'- cauCGGCCauaUGGGGUUGCGGagcu -5'
11084 5' -55.3 NC_002794.1 + 10230 0.67 0.916031
Target:  5'- uUAGCaGGUG-ACCCCGcCGUCUCGu -3'
miRNA:   3'- cAUCGgCCAUaUGGGGUuGCGGAGCu -5'
11084 5' -55.3 NC_002794.1 + 119555 0.67 0.910193
Target:  5'- --cGCCGGccacGUGUCCCGgaGCGCCUUGAc -3'
miRNA:   3'- cauCGGCCa---UAUGGGGU--UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 98096 0.68 0.904124
Target:  5'- uUGGCgGGUAU-CCCCggUGCCaaCGGg -3'
miRNA:   3'- cAUCGgCCAUAuGGGGuuGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 86599 0.68 0.904124
Target:  5'- -gAGCCGGgacggAUGCUCCGGCucgaGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 63081 0.68 0.904124
Target:  5'- -gGGCCGGcUGUACUUCAGCGCgCUg-- -3'
miRNA:   3'- caUCGGCC-AUAUGGGGUUGCG-GAgcu -5'
11084 5' -55.3 NC_002794.1 + 86647 0.68 0.904124
Target:  5'- -gAGCCGGgacggAUGCUCCGGCccgaGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86431 0.68 0.904124
Target:  5'- -gAGCCGGgacggAUGCUCCGGCucgaGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.