miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11084 5' -55.3 NC_002794.1 + 86599 0.68 0.904124
Target:  5'- -gAGCCGGgacggAUGCUCCGGCucgaGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 98096 0.68 0.904124
Target:  5'- uUGGCgGGUAU-CCCCggUGCCaaCGGg -3'
miRNA:   3'- cAUCGgCCAUAuGGGGuuGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 181676 0.68 0.904124
Target:  5'- --cGuuGGUGUGCgcggaCCGccGCGCCUCGGc -3'
miRNA:   3'- cauCggCCAUAUGg----GGU--UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 37996 0.68 0.900373
Target:  5'- -cAGCCGGgccacgccguagGCCUgCAGCGCUUCGGg -3'
miRNA:   3'- caUCGGCCaua---------UGGG-GUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 45022 0.68 0.891303
Target:  5'- cGUGGCCGGgugcuccGCaCCCAGCGCgguggCGAg -3'
miRNA:   3'- -CAUCGGCCaua----UG-GGGUUGCGga---GCU- -5'
11084 5' -55.3 NC_002794.1 + 74386 0.68 0.891303
Target:  5'- -cGGCCGGcgcgacUACacgaCCgAGCGCCUCGAc -3'
miRNA:   3'- caUCGGCCau----AUGg---GG-UUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 63934 0.68 0.884556
Target:  5'- -cGGCCGGcgagucucgAgUCCGACGCCUCGc -3'
miRNA:   3'- caUCGGCCaua------UgGGGUUGCGGAGCu -5'
11084 5' -55.3 NC_002794.1 + 67335 0.68 0.884556
Target:  5'- --cGCCaGG-GUGCCCCGGCGCCg--- -3'
miRNA:   3'- cauCGG-CCaUAUGGGGUUGCGGagcu -5'
11084 5' -55.3 NC_002794.1 + 37777 0.68 0.884556
Target:  5'- -cGGCCGucgucGUcgGCCgCAgGCGCCUCGAc -3'
miRNA:   3'- caUCGGC-----CAuaUGGgGU-UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 182012 0.68 0.884556
Target:  5'- -aAGcCCGGg--ACCCCGGCGUC-CGGg -3'
miRNA:   3'- caUC-GGCCauaUGGGGUUGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 116911 0.68 0.884556
Target:  5'- -cGGCCGGUccggcgucgGCUCCGGCGUCgUCGGc -3'
miRNA:   3'- caUCGGCCAua-------UGGGGUUGCGG-AGCU- -5'
11084 5' -55.3 NC_002794.1 + 186304 0.69 0.870413
Target:  5'- -cGGCCGGUc-GCCgCGGCGCgCUCGu -3'
miRNA:   3'- caUCGGCCAuaUGGgGUUGCG-GAGCu -5'
11084 5' -55.3 NC_002794.1 + 194019 0.69 0.855434
Target:  5'- -cGGCCGcc--GCCgCCGGCGCCUCGc -3'
miRNA:   3'- caUCGGCcauaUGG-GGUUGCGGAGCu -5'
11084 5' -55.3 NC_002794.1 + 122685 0.69 0.847645
Target:  5'- --uGCCGGUc-GCgCCAGCGCCgggCGAc -3'
miRNA:   3'- cauCGGCCAuaUGgGGUUGCGGa--GCU- -5'
11084 5' -55.3 NC_002794.1 + 180787 0.69 0.839665
Target:  5'- gGUGGCCGGggauCUCCGuuugagcgACGUCUCGGa -3'
miRNA:   3'- -CAUCGGCCauauGGGGU--------UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 119598 0.69 0.831501
Target:  5'- --cGUCGcaGUcGCUCCAGCGCCUCGAg -3'
miRNA:   3'- cauCGGCcaUA-UGGGGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 114845 0.7 0.824001
Target:  5'- -cGGCuCGGaggaccucccgccGCUCCAGCGCCUCGAg -3'
miRNA:   3'- caUCG-GCCaua----------UGGGGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 79283 0.7 0.823159
Target:  5'- -cGGCCGcGUcuuuuccugcGUGgCCgAGCGCCUCGAu -3'
miRNA:   3'- caUCGGC-CA----------UAUgGGgUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 24010 0.7 0.814648
Target:  5'- -gGGCCGccGUcACCgCGGCGCCUCGGc -3'
miRNA:   3'- caUCGGCcaUA-UGGgGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 82457 0.7 0.814648
Target:  5'- -cGGUCGGcccgACCUCGACGCCgUCGGc -3'
miRNA:   3'- caUCGGCCaua-UGGGGUUGCGG-AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.